LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5021	ATGATGGCAATGCAGCAACAAGAGCAAGTGATTGGAGGTGGTAGCAACCGTATAGCAGCTGTCAATGTCACACCCTCTAACAACACTAACGATCTTCATACACCATCACATTCAAAAAAAGAGAAACCATGGAGAGAGTTCTTGACATATGTAGGTCCCGGTTTTCTAGTCTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAGGCGGGAGCCAACCACAAATATGAGCTGCTGTGGGTGATACTTATTGGGTTGGTGTTTGCTCTTATAATTCAGTCATTGGCTGCAAATTTAGGCGTTTGTACCGGCAAACACCTTTCAGAAGTATGTAAAGCAGAGTACCCATTATTTGTCAAGTACTGCTTGTGGTTATTAGCAGAGGCTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCACTTAACATACTCTTCCACATACCAGTATGGGTTGGAGTTCTCTTAACGGGCTGCAGCACTCTCTTGCTTCTTGGTCTCCAGAGATTTGGGGTAAGGAAGTTGGAGCTGCTTATATCAATCCTAGTTTTTGTGATGGCTGCATGTTTCTTTGTGGAAATGGGATATGTCAAACCCTCTACTTCCGGCGTATTGAAAGGAATGTTTATACCTAAACTCAGCGGTCATGGAGCCACAGGCGATGCCATTGCCCTTTTGGGTGCCCTTGTCATGCCACACAATCTTTTCCTCCACTCTGCTCTGGTGCTGTCTAGAAAAGTGCCTACTTCCGTACGTGGCATCAATGATGCATGTAAATACTTTCTCATAGAGAGTGGATTCGCATTGTTTGTGGCGTTTCTAATCAATGTTGCAATGATTTCTGTGTCTGGCACTGTTTGCTCTGCTACCAACCTTTCTGCAGAAACTTCTGATCAATGCAGCGACCTTACCCTTAACTCTGCTTCTTTCCTTCTTAAGAATGTGTTGGGACGGTCGAGCTCAACCATTTATGCCATAGCATTGCTGGCATCAGGACAAAGTTCCACCATCACTGGAACCTATGCAGGGCAATACATTATGCAGGGTTTCTTAGACTTAAAGATGAAAACATGGAAAAGGAACTTGGTGACAAGGATCATTGCCATAACACCTAGTCTTGTTGTCTCTATCATTGGTGGTTCTTCTGGTGCTGGTCGACTTATCGTCATCGCATCGATGATACTTTCTTTTGAGCTCCCATTCGCTTTAATTCCGCTCCTTAAGTTCAGCAGTAGCAGTACTAAAATGGGACCTCATAAGAATTCTTTGTTTATCATTATCTTCTCATGGATACTAGGTATGGGGATTATCTGTATCAATGTGTACTACCTCATTACCGCTTTTGTGGATTGGATAATTCATAATAGTTTACCAAAGGTGGCAAATGTGTTCATTGGGATCTTAGTGTTTCCTCTGATTGCGATCTATATTCTCTCAGTTATCTACCTCACATTCAGAAAAGACACTGTCGAAACATATATCGAGACAAAGAATGACCCAATGATGCAAACTCATGTGGAAAAGGGGTTTATGAACAATGGTCAATTAGAGCTGAGCCAAGTTCCTTATAGAGAAGATTTAGCTGATATCCCACTACCACAATAG	1626	0.4274	MMAMQQQEQVIGGGSNRIAAVNVTPSNNTNDLHTPSHSKKEKPWREFLTYVGPGFLVSLAYLDPGNMETDLQAGANHKYELLWVILIGLVFALIIQSLAANLGVCTGKHLSEVCKAEYPLFVKYCLWLLAEAAVIAADIPEVIGTAFALNILFHIPVWVGVLLTGCSTLLLLGLQRFGVRKLELLISILVFVMAACFFVEMGYVKPSTSGVLKGMFIPKLSGHGATGDAIALLGALVMPHNLFLHSALVLSRKVPTSVRGINDACKYFLIESGFALFVAFLINVAMISVSGTVCSATNLSAETSDQCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDLKMKTWKRNLVTRIIAITPSLVVSIIGGSSGAGRLIVIASMILSFELPFALIPLLKFSSSSTKMGPHKNSLFIIIFSWILGMGIICINVYYLITAFVDWIIHNSLPKVANVFIGILVFPLIAIYILSVIYLTFRKDTVETYIETKNDPMMQTHVEKGFMNNGQLELSQVPYREDLADIPLPQ*	542

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5021	541	Hamap	Divalent metal cation transporter MntH [mntH].	28	455	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	Pfam	Natural resistance-associated macrophage protein	68	429	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	45	421	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PRINTS	Natural resistance-associated macrophage protein signature	154	173	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PRINTS	Natural resistance-associated macrophage protein signature	367	384	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PRINTS	Natural resistance-associated macrophage protein signature	229	252	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PRINTS	Natural resistance-associated macrophage protein signature	339	358	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PRINTS	Natural resistance-associated macrophage protein signature	399	418	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PRINTS	Natural resistance-associated macrophage protein signature	179	200	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PRINTS	Natural resistance-associated macrophage protein signature	126	152	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	37	541	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5021	541	PANTHER	METAL TRANSPORTER NRAMP5	37	541	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5021	Lja-Chr1	70483183	70487926	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g5021	14	541	Inorganic Solute Cotransporters	AT1G15960	59.357	0.0	630

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5021	K21398		-	gmx:100787785	893.264

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g5021	1	70483183	70487926	Lja1g5021	1	70483183	70487926	ECH