LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5019	ATGATGATGGCAATGCAGCAGCAAGAGCAAGTGAATAATGGTAGCAATCGAATAGCAGCGATCAATAGGACACCCTCAAACACTAACAGTTGTCACACACCATATCATTCAAATCACGAGAAACCATGGAGAAAGTTTTTGTCACATGTGGGTCCTGGTTTCTTAGTCTCATTGGCCTATCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCCGGAGCCAACCACGGATATGAGCTGCTGTGGGTGATACTTATTGGGTTGGTGTTTGCTCTTATAATTCAGTCACTGGCTACAAATCTTGGTGTTTGTACTGGCAAACACCTTTCAGAATTATGTAAAGCAGAATACCCATTACTTGTGAAGTACTGCTTGTGGTTATTAGCAGAGGCTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCACTTAACATACTCTTCCACATACCAGTATGGGTTGGAGTTCTCTTAACTGGCTGCAGCACTCTCTTGCTTCTTGGTCTCCAGAGATTTGGGGTGAGGAAGTTGGAAATGCTTATAGCAATCCTAGTTTTTGTGATGGCTGCATGTTTCTTTGTGGAAGTAGCCTATGTCAAACCCTCTGCTTCTGGTGTATTAAAAGGAGTGTTTACACCCAAACTCAATAATCATGAAGCCACAGGCGATGCTATTGCCCTTTTGGGTGCCCTTGTCATGCCGCACAATCTTTTCCTCCACTCTGCTCTGGTGCTGTCTAGAAAAGTACCTACTTCCGTTCGCGGCATTAATCATGCATGTAGGTTCTTTCTCATAGAGAGTGGGTTCGCGCTGTTTGTGGCATTTCTAATCAATGTGGCAATGATTTCTGTGTCCGGCACTGTTTGCACCGCTACCAACCTTTCTGCAGAAAATACTGATCAATGCAGTGACCTTACCCTTAATTCTGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGGTCGAGCTCAACCATTTATGCCATAGCACTGCTAGCCTCAGGACAAAGTTCTGCCATCACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTCTTAGACTTGAAGATGAAAAAATGGATTAGGAACTTGGTGACAAGGATCATTGCCATAACACCTAGTCTTATTGTCTCTATCATTGGTGGTTCTGCTGGTGCTGGTCGACTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCTCTTTAATTCCACTGCTTAAGTTTAGCAGTAGCAGTACCAAGATGGGACCTCACAAGAACTCATTGATTGTATCGTGTCCGTGCTTCCCAGGTATCAATGTATACTACCTTATTACTGCTTTTGTGGGTTGGATATTTCATAACAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATCATAGTGTTTCCTTTAATGGCAATCTATATTCTCTCAGTTATCTACCTCATATTCAGAAAAGACAGTGTCCAAATATATGTTGAGACAAAGAGTGACCCAATGATGCAAACTCATGTGGAAAAGGGGTTTATGAACAATGGTCAATTAGAGCTGAGCCAAGTTCCTTACAGAGAAGATTTAGCTGATATCCCACTACCAGAATAG	1605	0.4293	MMMAMQQQEQVNNGSNRIAAINRTPSNTNSCHTPYHSNHEKPWRKFLSHVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWVILIGLVFALIIQSLATNLGVCTGKHLSELCKAEYPLLVKYCLWLLAEAAVIAADIPEVIGTAFALNILFHIPVWVGVLLTGCSTLLLLGLQRFGVRKLEMLIAILVFVMAACFFVEVAYVKPSASGVLKGVFTPKLNNHEATGDAIALLGALVMPHNLFLHSALVLSRKVPTSVRGINHACRFFLIESGFALFVAFLINVAMISVSGTVCTATNLSAENTDQCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKKWIRNLVTRIIAITPSLIVSIIGGSAGAGRLIIIASMILSFELPFSLIPLLKFSSSSTKMGPHKNSLIVSCPCFPGINVYYLITAFVGWIFHNSLPKVANVFIGIIVFPLMAIYILSVIYLIFRKDSVQIYVETKSDPMMQTHVEKGFMNNGQLELSQVPYREDLADIPLPE*	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5019	534	PANTHER	METAL TRANSPORTER NRAMP5	36	534	-	-
	Lja1g5019	534	Hamap	Divalent metal cation transporter MntH [mntH].	37	448	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	Pfam	Natural resistance-associated macrophage protein	67	428	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	PRINTS	Natural resistance-associated macrophage protein signature	153	172	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	PRINTS	Natural resistance-associated macrophage protein signature	178	199	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	PRINTS	Natural resistance-associated macrophage protein signature	338	357	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	PRINTS	Natural resistance-associated macrophage protein signature	125	151	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	PRINTS	Natural resistance-associated macrophage protein signature	228	251	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	PRINTS	Natural resistance-associated macrophage protein signature	366	383	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	PRINTS	Natural resistance-associated macrophage protein signature	398	417	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	36	534	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5019	534	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	44	420	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5019	Lja-Chr1	70460548	70464632	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g5019	10	534	Inorganic Solute Cotransporters	AT1G15960	58.192	0.0	611

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5019	K21398		-	gmx:100787785	845.884

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g5019	1	70460548	70464632	Lja1g5019	1	70460548	70464632	ECH