LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5018	ATGATGGAGCAAGTGAACGATGCAAATGGACCACATAATCATCAATACTCCTCAAATCACGAGAAACCATGGAGAAAGTTCTTGACACATGTAGGTCCTGGTTTCCTGGTCTCCTTGGCTTACCTTGATCCTGGGAACATGGAAACTGATATGCAAGCTGGAGCTAACCACAGATATGAGCTGCTCTGGTTGGTACTCATTGGACTGATATTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTCGGTGTAATCACTGGGAAACACCTTTCAGAAATATGTAAAGCAGAGTACCCATTATTTGTTAAGTACTGCTTGTGGTTATTAGCAGAGGTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCACTTAACATACTCTTCCACATACCATTATGGGTAGGAGTTCTGATGACTGGCTGCAGCACTCTCTTGCTTCTGAGTCTGCAGAGATTTGGGGTGAGGAAGTTGGAGCTACTGATAACAATCCTAGTTTTTGTGATGGCTGCATGTTTCTTTGCTGAAATGAGCTATGTCAATGTCCCCGCTTCTGGTATACTCAAGGGAATGTTTGTGCCCAAACTCGATGGTGATGGAGCCGTTGGCGATGCAATTGCCCTTCTCGGTGCCCTCATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTGTCTAGAAAAGTACCAATTTCGGTGCGCGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGGTTCGCACTCTTTGTAGCATTTCTAATCAATGTTGCAATGATTTCTGTCACGGGCACTGTTTGTTTTGCCAACAACCTTTCTGCAGAAAATACTGATCGGTGCAATGATCTTACCCTTAACTCTGCTTCCTTCCTTCTGAAGAATGCGTTGGGAAGGTCTAGCTCAACCGTTTATGCCATAGCACTTCTAGCCTCAGGACAAAGCTCTACTATCACTGGAACCTATGCAGGGCAGTACATTATGCAGGGTTTCTTGGAGATAAAGATGAAAAGATGGAAGAGGAACTTAATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTTCCATCATTGGTGGTTCTTCTGGATCCAGTCGCCTTATTATCATTGCATCAATGATACTTTCTTTTGAGCTTCCTTTTGCATTGATTCCACTTCTTAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTTTGATTATTATTGTCATCTCATGGATACTAGGCTTTGGGATCATTGGTGTCAATGTATACTATCTCAGCACTGCCTTCGTGAAGTGGCTAATTCATAGCAATTTGCCAAAGGTGGCAAATGTGTTCATAGGGATTATAGTGTTTCCTCTAATGGCAGTTTATATTCTCTCAGTTATCTACCTAACATTTAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAATGACCCAATGCAAAGCCATGTAGAAAATGGGATTTTGGATAATGGTCAATTAGAGTTGAGCCATGCTCCTTACAGAGAAGACTTAGCTAGTTTCTCACTTCCAGAATAG	1563	0.4248	MMEQVNDANGPHNHQYSSNHEKPWRKFLTHVGPGFLVSLAYLDPGNMETDMQAGANHRYELLWLVLIGLIFALIIQSLAANLGVITGKHLSEICKAEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWVGVLMTGCSTLLLLSLQRFGVRKLELLITILVFVMAACFFAEMSYVNVPASGILKGMFVPKLDGDGAVGDAIALLGALIMPHNLFLHSALVLSRKVPISVRGINDACRYFLIESGFALFVAFLINVAMISVTGTVCFANNLSAENTDRCNDLTLNSASFLLKNALGRSSSTVYAIALLASGQSSTITGTYAGQYIMQGFLEIKMKRWKRNLMTRCIAIAPSLVVSIIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSLIIIVISWILGFGIIGVNVYYLSTAFVKWLIHSNLPKVANVFIGIIVFPLMAVYILSVIYLTFRKDTVKTYIETKNDPMQSHVENGILDNGQLELSHAPYREDLASFSLPE*	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5018	520	Pfam	Natural resistance-associated macrophage protein	48	409	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PRINTS	Natural resistance-associated macrophage protein signature	319	338	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PRINTS	Natural resistance-associated macrophage protein signature	159	180	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PRINTS	Natural resistance-associated macrophage protein signature	379	398	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PRINTS	Natural resistance-associated macrophage protein signature	209	232	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PRINTS	Natural resistance-associated macrophage protein signature	106	132	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PRINTS	Natural resistance-associated macrophage protein signature	347	364	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PRINTS	Natural resistance-associated macrophage protein signature	134	153	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	17	519	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	Hamap	Divalent metal cation transporter MntH [mntH].	13	435	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	25	401	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g5018	520	PANTHER	METAL TRANSPORTER NRAMP5	17	519	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5018	Lja-Chr1	70446146	70451621	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g5018	8	520	Inorganic Solute Cotransporters	AT1G15960	57.336	0.0	611

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5018	K21398		-	gmx:100787785	856.284

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g5018	1	70446146	70451621	Lja1g5018	1	70446146	70451621	ECH