Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5016 ATGGCGCCAATCGTTCAGAGCTCTCAACCATGGGTCGAAAAATACCGCCCAAAGCAAGTGAAAGACGTCGCTTACCAAGATGAAGTTGTTCGAGTCCTCACCAACACTCTCGAAACCGGAAGCTGCCCTCACATGCTCTTCTATGGTCCCCCCGGTACCGGAAAAACCACCACTGCGCTCGCAATTGCGCACCAGCTTTTCGGGCCTGAGCTGTATAAGTCCAGGGTGCTGGAGCTCAATGCTAGTGATGATCGCGGGATTAACGTTGTTCGGACTAAGATTAAGGATTTTGCTGCTGTGGCTGTTGGTACTAACCCTAAGAAAGGTGGTTATCCTTGTCCACCATATAAGATTATTGTTCTAGATGAGGCCGATTCGATGACCGAAGATGCTCAGAATGCCCTGAGGCGTACTATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAAATCATGAGCAGCCGCATATTATACATCTGTAATGAAGAAGGAATCCATCTTGATGCTGAGGGTCTTTCTACCCTTAGTTCTATTTCTCAAGGAGATCTTCGTCGGGCCATCACATACTTGCAGTCTTCTGCTCGCTTATTTGGTTCTCACATTTCTTCAAAGGACCTGATTTCTGTGTCTGGGGTTGTTCCAGAAAATGTTGTGGAGGCAATTCTTAAAGCATGTAAGAGTGGTAATTTTGATTTAGCCAACAAGGAAGTTAATAATTTCATTGCAGAGGGGTATCCAGCCTCTCAGTTGCTAACTCAGTTATTTGATGCCATTGTTGAAGAAAAAGGCACATCTGATAAACAGAAGGCAAGAATATGCAAGAAGCTGGGTGAAGCAGATAAGTGCCTAGTTGATGGAGCTGATGAATACTTGCAGCTTCTTGATGTGATCAGCAATACAACGAAAGCCTTTTGCGACATGCCAGAAGGGTTATCTTACGAGGGTTAA 1029 0.4422 MAPIVQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICNEEGIHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSGVVPENVVEAILKACKSGNFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKARICKKLGEADKCLVDGADEYLQLLDVISNTTKAFCDMPEGLSYEG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5016 342 CDD HLD_clamp_RFC 174 233 - -
Lja1g5016 342 Gene3D - 2 173 IPR027417 -
Lja1g5016 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Lja1g5016 342 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Lja1g5016 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Lja1g5016 342 Gene3D - 240 329 - -
Lja1g5016 342 Pfam Replication factor C C-terminal domain 240 325 IPR013748 -
Lja1g5016 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Lja1g5016 342 CDD AAA 26 166 - -
Lja1g5016 342 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Lja1g5016 342 SMART AAA_5 41 174 IPR003593 -
Lja1g5016 342 Gene3D - 175 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5016 Lja-Chr1 70404705 70415189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5016 1 336 Core DNA Replication Machinery Family AT1G21690 77.745 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5016 K10755 - gmx:100788329 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5016 1 70404705 70415189 Lja1g5016 1 70404705 70415189 ECH