Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5015 ATGTTCACCCGAACGCGGCGTTTCCCTCCTCCTCCTTCTTCTTCTTCTTCTTCATCTGAGAAGCGTTCCTCCACCGTTTCGGAAAAGGTGACCAAGAAGGTCGATGCTGTGAAGAGTCAATTCACGAAGAAGCAGAAGCGCCCCGCTCTAACTGATGTCAGCAATAGTAGAAATCCATCCACTCTTGCTGCGAGGACATTTGGTTGTGTTCCGCCCAAGCCTCTGGTTCCATGCATGTCCAAAACTGCCAAGACAAAAAAGGATTCCATTGTTACTTCGCAGAAAAAAGTTATTTCTGGGAACACTAGGCAAGCCTCACTGAGTTCAAAATCAACTGTATTGGCGTTTTCCAAAGATGCATGTTCAACTGGAACTAAGCAACCTAAGACTGGAGTTAAAGCCTTCGTTGCTCCAAGCACTGGTGATGTGGTTTATCCTAATTTTGATAGTGGGATCTCTGCTCCGGGGCTGGTGGGTAGTTCTCAAAGTAAATGCTTAAGCAATTCAGTTTCACTGGATGAGAGCATGTCAACAAGTGATTCTTTGATGAGTTTGGAATTTGAATATGCTGACAATGGTGATGTTGTATCGACCAAATCAATTGAGAATAGGGCATGTGGAATTCTCAGTATTTCAGACTCTTCGAAAATAGCAGGGAGAATACATGGCAGTGATGCCATCATGAAGAGAGAAGCAAATGAAGTTGTGGATATTGACTACAATATCAATGATCCACAATTCTGTGCATCCTTTGCCCATGAAATCTATGAAAATTTGCGTGTAACTGAGGAAACCAGAAGGCCGTCTATGGACTTTATGGAGAAGATACAGAAAGAACTCAATGCTACCATGCGGGCAATACTTATTGATTGGCTTGTGGAGGTTACTGAAGAGTATAGGCTTCTACCTGATACACTATTTTTGGCAGTTAACTACATTGATCGATATCTTTCGGGCAAGGCAATAATTCAGCAGCGATTACAACTACTTGGTGTTGCCTGCATGATGATTGCTGCCAAATACGAGGAGATTTGTGCCCCTAAGGCGGAAGATTTCTGTTACGTGACTGATAATACATACTCTAAGGAGCAGATATTGGAAATGGAATCTTCTGTTCTGTATTTCTTGAAATTTGAAATGACAGCTCCTACAGCTAGATGTTTTTTGAGGCGATTCATTAGAGTTGCCCAACAAACCTGTGAGGTTCCACTGATGCGGTTGGAGTATTTGGCAGACTATCTCGCAGAGTTATCTCTTCTAGAGTATGGCATGCTAAAGTACAAACCATCAGTAATAGCTGCATCAGCCACTTTCTTGGCTAAATACATACTTCTTCCTAGGAAGAAACCTTGGAATTCTATGCTGAGGCATTACACAGGTTACCAAGCATCAGAATTGCGTGAATGTGTCAAGCAATTGCATTGGTTGTTCTGCAATGGCTGTCTTAACTTAACTGCCATCAGGACAAAATACAGTCAACATAAGTTCAAGTTTGTAGCAAAGAAGTATTGCCCTCCATCAATACCTGTAGAAATATTTCACAACTAA 1548 0.4199 MFTRTRRFPPPPSSSSSSSEKRSSTVSEKVTKKVDAVKSQFTKKQKRPALTDVSNSRNPSTLAARTFGCVPPKPLVPCMSKTAKTKKDSIVTSQKKVISGNTRQASLSSKSTVLAFSKDACSTGTKQPKTGVKAFVAPSTGDVVYPNFDSGISAPGLVGSSQSKCLSNSVSLDESMSTSDSLMSLEFEYADNGDVVSTKSIENRACGILSISDSSKIAGRIHGSDAIMKREANEVVDIDYNINDPQFCASFAHEIYENLRVTEETRRPSMDFMEKIQKELNATMRAILIDWLVEVTEEYRLLPDTLFLAVNYIDRYLSGKAIIQQRLQLLGVACMMIAAKYEEICAPKAEDFCYVTDNTYSKEQILEMESSVLYFLKFEMTAPTARCFLRRFIRVAQQTCEVPLMRLEYLADYLAELSLLEYGMLKYKPSVIAASATFLAKYILLPRKKPWNSMLRHYTGYQASELRECVKQLHWLFCNGCLNLTAIRTKYSQHKFKFVAKKYCPPSIPVEIFHN* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5015 515 Pfam Cyclin, C-terminal domain 383 501 IPR004367 -
Lja1g5015 515 SUPERFAMILY Cyclin-like 243 380 IPR036915 -
Lja1g5015 515 MobiDBLite consensus disorder prediction 8 24 - -
Lja1g5015 515 CDD CYCLIN 284 373 IPR013763 -
Lja1g5015 515 Gene3D - 254 501 - -
Lja1g5015 515 Gene3D - 268 381 - -
Lja1g5015 515 ProSitePatterns Cyclins signature. 285 316 IPR006671 -
Lja1g5015 515 PANTHER CYCLINS 35 514 IPR039361 -
Lja1g5015 515 MobiDBLite consensus disorder prediction 44 63 - -
Lja1g5015 515 SMART cyclin_7 387 475 IPR013763 -
Lja1g5015 515 SMART cyclin_7 290 374 IPR013763 -
Lja1g5015 515 MobiDBLite consensus disorder prediction 25 42 - -
Lja1g5015 515 CDD CYCLIN 381 474 IPR013763 -
Lja1g5015 515 SMART Cyclin_C_2 383 505 IPR004367 -
Lja1g5015 515 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 35 514 - -
Lja1g5015 515 Pfam Cyclin, N-terminal domain 254 380 IPR006671 -
Lja1g5015 515 MobiDBLite consensus disorder prediction 1 66 - -
Lja1g5015 515 PIRSF Cyclin_A_B_D_E 161 511 IPR039361 -
Lja1g5015 515 PIRSF Cyclin_A_B_D_E 9 138 IPR039361 -
Lja1g5015 515 SUPERFAMILY Cyclin-like 383 507 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5015 Lja-Chr1 70397668 70402930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5015 136 515 Core Cell Cycle Gene Families AT1G44110 56.443 7.42e-153 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5015 K06627 - qsu:112028128 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5015 1 70397668 70402930 Lja1g5015 1 70397668 70402930 ECH