Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5014 ATGTCGTCGAACAATCATCGCCGTTCATCGTTCTCTTCCTCCACCGCATCGTCGTTAGCCAAACGCCATGCATCAGACAACAACAACAACAACAATAACAATAACAACTACGTCGTTGGTGCGGCGGCGGTTAAGGCTCCGGCCGCCGCTTCTCACTCCGCCAAGAAGCGTCCCCCTCTCTCCAACCTCACCAATCACATCGCTTCTCGCAACTCATCATCACAATCATTGGTACCATGCGTGAGTAAATTTGCGAAAACCAAGAAAGAGGCACCTCCTAAAGTAGCACCTGCTTTGCCGAATGTGAAATCTGCTGCTGCTGCGGTTGTTTTTCCTAAGGTTGCTACTGCTACTGCTTCGTTCACTGAAAGGAACGAAGATGATGCTGCTGCTGCTGCTTCAGGGGCTAGAGTTTCTGTTCCTGTTTCGACCAGCATGGATGTTTCCCCTTGTAAATCTGATGGGTGTTCGGTTTCTATGGATGAGTCCATGTCTTCTTGTGATTCTTTCAAGAGTCCTGCTGAGATTGAATATGTGGACAATAGTGATGTTTCAGCTGTGGATTCTATTGAGAGGAAGACATTCAGCATTTTGAACATCTCTGATGCTAAAGAGCAAGCAGGAAACATCTGTAGTAGGGACATTCTTGTTGAGGAATTGGAAAAGGGGGAGAAAATTGTTAATATTGATAATGATCACATGGATCCCCAGCTCTGTGCTTCCTTTGCTTGTGATATCTACAAGCACCTGCGTGCATCTGAGGCAAAGAAAAGACCTTCCACAGATTTCATGGAGAAAGTTCAGAAGGATATAAATACCAGCATGCGTGCTATATTGATCGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCTGATACATTGTATTTGACAGTAAACTACATAGATCGGTATCTCTCAGGGAATGCAATGAGCAGGCAAAAGTTACAATTACTTGGGGTTGCCTCCATGATGATTGCCTCGAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGACAACACATACTTCAAAGAGGAGGTCTTACAGATGGAATCTGAAGTCTTGAATTTTCTGAAGTTCGAAATGACAGCCCCAACAATCAAATGTTTCTTAAGACGATTTGTACGTGCAGCTCAAGGAGTTGAAGAGGTCCCTTCCCTGCAACTTGAGAGTTTGACAAACTACATTGCCGAATTGTCTCTCATGGAGTACAGCATGCTTTGTTATGCACCATCACTTGTAGCTGCTTCTGCAATTTTCCTGGCCAAATTTATACTATTCCCTTCAATAAAACCATGGAGTTCAACATTGCAGCATTACACACTCTACCAGCCTTCTGATTTGTGTGTTTGTGTAAAAGAACTCCATCGCCTTTTTTGCAACAGCCCTAATTCTAATTTGCCCGCAATTAAGGAGAAATACAGTCAACACAAGTACAAATATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCTTCAGAATTTTTCCAGAATTGA 1524 0.4364 MSSNNHRRSSFSSSTASSLAKRHASDNNNNNNNNNNYVVGAAAVKAPAAASHSAKKRPPLSNLTNHIASRNSSSQSLVPCVSKFAKTKKEAPPKVAPALPNVKSAAAAVVFPKVATATASFTERNEDDAAAAASGARVSVPVSTSMDVSPCKSDGCSVSMDESMSSCDSFKSPAEIEYVDNSDVSAVDSIERKTFSILNISDAKEQAGNICSRDILVEELEKGEKIVNIDNDHMDPQLCASFACDIYKHLRASEAKKRPSTDFMEKVQKDINTSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMSRQKLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESEVLNFLKFEMTAPTIKCFLRRFVRAAQGVEEVPSLQLESLTNYIAELSLMEYSMLCYAPSLVAASAIFLAKFILFPSIKPWSSTLQHYTLYQPSDLCVCVKELHRLFCNSPNSNLPAIKEKYSQHKYKYVAKKYCPPSIPSEFFQN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5014 507 SMART Cyclin_C_2 374 497 IPR004367 -
Lja1g5014 507 SMART cyclin_7 281 365 IPR013763 -
Lja1g5014 507 SMART cyclin_7 378 466 IPR013763 -
Lja1g5014 507 MobiDBLite consensus disorder prediction 1 74 - -
Lja1g5014 507 Gene3D - 259 372 - -
Lja1g5014 507 PANTHER CYCLIN-A1-1 44 506 - -
Lja1g5014 507 CDD CYCLIN 275 364 IPR013763 -
Lja1g5014 507 MobiDBLite consensus disorder prediction 57 74 - -
Lja1g5014 507 ProSitePatterns Cyclins signature. 276 307 IPR006671 -
Lja1g5014 507 PANTHER CYCLINS 44 506 IPR039361 -
Lja1g5014 507 SUPERFAMILY Cyclin-like 235 371 IPR036915 -
Lja1g5014 507 Pfam Cyclin, C-terminal domain 374 493 IPR004367 -
Lja1g5014 507 Pfam Cyclin, N-terminal domain 245 371 IPR006671 -
Lja1g5014 507 SUPERFAMILY Cyclin-like 374 499 IPR036915 -
Lja1g5014 507 CDD CYCLIN 372 465 IPR013763 -
Lja1g5014 507 PIRSF Cyclin_A_B_D_E 2 503 IPR039361 -
Lja1g5014 507 MobiDBLite consensus disorder prediction 1 39 - -
Lja1g5014 507 Gene3D - 245 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5014 Lja-Chr1 70386361 70389601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5014 6 507 Core Cell Cycle Gene Families AT1G44110 60.198 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5014 K06627 - gmx:547781 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5014 1 70386361 70389601 Lja1g5014 1 70386361 70389601 ECH