LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5012	ATGAGTTTCTTGAGACCCTCTGCATTGTACCATTTCCTGATCACATACTCTTCTCTGCGATGGATGCCATGTCAGAGTTCGGGCTTCCTTCGTTGGCCTGGTCTCGATGGTTTCTTGAGGCTTCTGGTTGTTGGGCTCCTCTGGTCTACCTTCTCTGAGCTTCGTTCCATACCTTCATCTTCCATGTTTCCAACTCTCCGTGTTGCCGATCGAATTATCGTTGAAAAGGCTTCATATTACTTCAGGAGTCCTGCTATCCATGAAATTGTAACGTTTCGGGATCCAACACAGCTTTCTGGAGACAACCCAGATGTTGTTTTTATTAAGAGAGTTGTCGCAAAAGAAGGTGACACCGTTGAGGTTCATCATGGGAGACTCTACATAAATGGTGTTGCTCAGGAGGAAGATTTCATTGCAGAGCAACCAGCATACACAGTGAAATCAACTTATGTGCCCAAAGGCCATGTTTATGTCTTGGGGGATAATCGTAACAATAGCTATGACTCCCATGTATGGGGACCACTTCCTGTTAAAAACATAATTGGAAGATATGTCATGTGCTTTCACAGACCAACAAATTGA	582	0.4416	MSFLRPSALYHFLITYSSLRWMPCQSSGFLRWPGLDGFLRLLVVGLLWSTFSELRSIPSSSMFPTLRVADRIIVEKASYYFRSPAIHEIVTFRDPTQLSGDNPDVVFIKRVVAKEGDTVEVHHGRLYINGVAQEEDFIAEQPAYTVKSTYVPKGHVYVLGDNRNNSYDSHVWGPLPVKNIIGRYVMCFHRPTN*	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5012	193	CDD	S26_SPase_I	53	183	IPR019533	GO:0004252\|GO:0006465
	Lja1g5012	193	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g5012	193	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	107	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g5012	193	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	151	170	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g5012	193	PANTHER	SIGNAL PEPTIDASE I	1	193	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g5012	193	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016021
	Lja1g5012	193	Gene3D	Umud Fragment, subunit A	59	191	-	-
	Lja1g5012	193	ProSitePatterns	Signal peptidases I signature 3.	156	169	IPR019758	GO:0004252\|GO:0016021
	Lja1g5012	193	SUPERFAMILY	LexA/Signal peptidase	51	188	IPR036286	-
	Lja1g5012	193	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	1	193	-	-
	Lja1g5012	193	TIGRFAM	sigpep_I_bact: signal peptidase I	41	188	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g5012	193	Pfam	Signal peptidase, peptidase S26	39	187	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5012	Lja-Chr1	70369833	70373838	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g5012	62	183	MADS-box Gene Family	AT1G29960	32.520	1.14e-10	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5012	K03100		-	gmx:100306121	335.109

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g5012	1	70369833	70373838	Lja1g5012	1	70369833	70373838	ECH