Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4994 ATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTCACCTACTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATCAGTGTTCTATGTGATGCTCAAGTTTCTCTTATCATCTTTGATACCAGAGAGCCTCAGGGAAGACCCTTTGGGATGCTAAGCATGAGGCACTTGAAGGGTGATGACATTACCTCACTGAATTACAAAGAGCTGATGGCTCTAGAGGAAGCCCTTGAGAATGGCCTCAAGGGTATCCGTGAGAAAAAGAATGAAGTGCACAGGATGATCAAGAGAAACGGCAAGATTTTGGAGGAGCAAAATAAGGAGCTTAATTTCCTTCTGCAACAGCATTTGGCACTGGAAGGTGTGGGAAACATGCATGGACAATGGATTTGA 420 0.4429 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFDTREPQGRPFGMLSMRHLKGDDITSLNYKELMALEEALENGLKGIREKKNEVHRMIKRNGKILEEQNKELNFLLQQHLALEGVGNMHGQWI* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4994 139 Coils Coil 79 99 - -
Lja1g4994 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 58 IPR002100 GO:0003677|GO:0046983
Lja1g4994 139 Pfam K-box region 62 119 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g4994 139 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 49 - -
Lja1g4994 139 ProSiteProfiles K-box domain profile. 21 128 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g4994 139 SMART madsneu2 1 63 IPR002100 GO:0003677|GO:0046983
Lja1g4994 139 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lja1g4994 139 Gene3D - 13 127 IPR036879 GO:0003677|GO:0046983
Lja1g4994 139 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 49 - -
Lja1g4994 139 PANTHER SERUM RESPONSE FACTOR HOMOLOG 62 133 - -
Lja1g4994 139 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja1g4994 139 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja1g4994 139 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja1g4994 139 PANTHER MADS-BOX TRANSCRIPTION FACTOR 62 133 - -
Lja1g4994 139 SUPERFAMILY SRF-like 1 52 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4994 Lja-Chr1 70056303 70059164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4994 1 104 MADS-box Gene Family AT5G20240 43.836 1.59e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja1g4994 K-box 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4994 K09264 - gmx:100795861 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4994 1 70056303 70059164 Lja1g4994 1 70056303 70059164 ECH
Lja1g5824 1 104648028 104656623 Lja1g4994 1 70056303 70059164 PCT