Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4990 ATGGGCTCGTGTGGGGAATCTGCGATCGGTGATGATCCCTCAGGCGGGTCTGGTATTGCAAAGAGTTTGTGTCCGGAGGTTCCGACGCCGTTAGGTTGTTCTGTGCAGGAGTCGTGTTCGGAAGAAGCTTGTGATGTGTTGGGGTCGAATGTTGACTTACCTGGTATGACTGATGGTTGTGTGGGAGGGGAGCATGTGGGTTCTGCGAGTCTTGTTGATGCTGCTGAGGGGTCCAGGGATGCTTTGGCTGATGGATGTGAGAATGCTGATGTGTTGAGGTCAGAGAAAAGCGCTGCTGCTGAGGGGTCCAGGGATGCTTTGGCAGATGGATGTGAAAATGCTGATGTGTTGAGGTCAGATAAAACCGCTGAAGATGGTTGTCAGAATTGCTTGGAGAATGGGGATGTTGAAGTTTCCTGTCTAAAAGGTGGTGAGCTGTGCTCAGAAGATGATTTTGGAGATGAAGTCAACTTTGAGCTGCCATCTGAGTCCATGACCACAAATAATTTGCAGAAGGAGTGCACTCAACAGGGTGATGAGAGGGATGATATGAGCAGCATTTTACCCTCAGCTGTAGATGATTCAGCAGTAATGGAAGGGAACAACGATGTTGCTGATTTACTCGCTGATGCTTTCAATGGTGTGTTTGATTTCAGGCATTCTGAAGTGTCTTTGGAATCAGAATCCATGGCTGACATACTAGTTGATTGCAACCAGAAAAATGAGCCAGGGGAAGTTATGAGAAATGAAGATACCTTGTCAATGGTTGTGGAAAAATGTGATGCTTCAGACGGAATGGAAATTGATGCTTGCAGGCAGATGTCTCCTTCACAGGGTATGGAAGTTCTGTCAGGTGTATCATATAGAAATACAAAAGTAGAGAGCACTAGTGATGAGCTATGTGCTCAGAAAGATGGAGTGGATTTGAATAGTACCTGTGAGGAAAAGATTGAAGCTGTTATTGATAATGAAACCACTGTTGATTCGTATAGGACCTTAGGGGGCTCACCTGTGGTTGATTCGCTTTGTGATGCTTTAGATGGAATAGAAGTCGATGCTTGCTGGAAGATATCTCCTTCACAGGAGGGTATGGAAGTTCCGTCAGGTGTATTACATAGAGATACAGAAGTAGAGAGCACAAGTGATGAGCTTTGTGCTCAGAACGATGGAGCGGATTGGAATAGTACCTGTGAGGAAAAGATTGAAGCTGCTATTGATAATGAAATCACCGTTAATTCGCAAAGGACCTTAGGGAGCTCACCTGTAGTTCATTCACTTTGTGAGCCTACCTTGCTGGGTCCGGGGAGTGAAATGAAGAATGGTATACTGCAAATAGAAGATAATTCTTGTGAATTGAATAACTATTCTGCAGAGGGAGCTGCTGACTCTACCTGTAAGAAAACATTTTATCCAGAGTCAGGTCAGCCCTCTGCTGTTTTAATCACTAATATCTCTTCGAAGGATGTGCCTGATCTTCTTTCTAAAAGTGATGATGTTTACATCAATGATAATCGTGTTGTAGACAATCCTGGACAGACAAATAGTGTAGGAAAAGAAGCTGTTGAAGTTGATTGTATCATTGAAAGTGAACAGTTACCTTCTCTAGGGAACACTCGGAGGACCAAATCTGGTCGTAAGACACCAACCAAAAAGGCTTCAAGAAAATGCAAGAACAAAGTCAGTGTTATACATCCAGGCGAGGGCATGAAGATAAACTTAGATTCTGCTAGAAAGAAAAGAAGTTGTTTATCCAAACCAGCTCGTTCTTCTATCTGGGGATTGCTTGGGAACATCAAACAATTTTTTCAGAAAGATAATGAGCTTGAGGTCAGTGAAGCCATGTGCCGGGAATTGGGGAAGCCTAGAAGCAAACGTCAAAATGGCAGAGCGATTAAGAGCGGTGCAAGTTCCAGTTCATTGAGTTTAGTGCAGAAGCAACCTGTATCAACTTCATCTACTCGCGTTCGTCTAAAGATAAAGTTTGGAAAAGAAATTGATTTAAGTTGCTCAAATGTCTTGACTCCAGAGGCTGTTGGTGGCTTGGCTTCTGCTGCCTACTTGGGGTCTGATTCCGGTTCACAGAGAGTAGCCAGCAATGCTGAAGATAAATTTTCTGAAGTGGTAGCTTTGAGCAATCTAGAATCTTTAACAAATGACCAGGATAAAAATGGTCTTGTTCTAGATGGACAAATTGCAAATGGCCACTTAGAAAATACAGAAAGAATGGAGAAGTCAGATGGAGGTGCGGAGGAACCATGTCTCACAGTTCTTCCTGAAAAGTTGGTTGAAGCATTGGTTAAGCCAATCGATATTAAGGTTATGGATCCAGGAACTTCACCTGATTCAGAAGTTATCAATTCAGTTCTGGAAGTTCAGGTTGGGGAAAGACATGAAGAAGATGTACATCACTCTGATTTAGGTTCTTCAAAGGAGTTCAATTCTAATTTAGATGTTACCATCAGTAAGAGAAGGAAGAAGAAAGACAAGCTTATTCGTTTGGGTAATTGTATCACTGAAGACGGATCACAAGATCCACCAGGAAAAAATAGAGCTAAGCATTCTAAGAATCACAGATGTAAGAAGAATTGCAGTGATGCAGTTAACTCTTTGGAATTGCCTACTTCCACTGAGATAAGCAAATCTTTGAACAATAGGGAATTGTCCACAGAATCATTGCCCCTTGCTGGAGTGATTGAACTTGGAGGCTCCACTGAGGCTTTGAAAGTTGAAGGTCAAATGGAAGTCAAGGCAGCTTGGAAACCATCTATTGATCATGGATTTTCAGAACCCCATGGTTCTGAGAATTTGCTGTCTTCTGCAAAATCCATGCGGCGGAAACTACCAAAAAGTCTGACTAGTAAAGTTGGCAAGGCCAAATCTAAAGCTTCTGAGTCGACGAGCAGGAAAAGGACAACTTCTAGCTGCAAGGAGAAACAGAACAAGCCAATTTGTAAGAGTGAAGTTAAAGGAGAAGGTCTCTCTCTCAAAGTTAAGTGTGAAGCGGAAGATCACCCACATCCAGCAGATGTAGTTGGAAATCACAAGATGGATGCTGCTGGAAACATTGATGCCAGTGACAATATCTCATCAGTCAATTTATCTAATTTGGACATGCTGCATGGTGGTGGTTTGGGAGAGCAGCCCCTATCACCGCGTAATGCATGGGTGAGTTGTGATAATTGTCACAAGTGGCGGCGTATTCCAGCTGCGCTAGCTGACCAGATAGATGCAACTAACTGCACCTGGACATGTAAAGACAGCAGTGATAAAGCCTTTGCTGACTGTGCTATCCCACAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCAGAGGGCTCTGGTGAAGAAGATGTGTATGAACGCTCTAAAAACTATAAGGAATTGGAATATCGACCGCCTCTGGTTCCCCAGCAATCAACCTTTACCCGTATTTTCACCAATGAGTTTCTGCATCGTAGCCGTAAAACTCAGACTATTGACGAGATAATGGTCTGCCATTGCAAGCCATCTCAAGAAGGCAAGTCGGGCTGTGGGGATGAATGTCTAAACCGGATGCTTAACATTGAATGTGTGCAAGGAACCTGCCCATGTGGGGGGCGTTGTTCCAATCAGCAGTTCCAAAAACGCAAGTATGCCAGCCTGAGGTGGTTTAAAAGTGGGAGAAAAGGTTATGGACTGAAGGCAGTTGAGGATGTATCTAAAGGCCAGTTTCTTATTGAATATGTGGGAGAGGTGCTTGATATGCATGCTTATGAGGCACGGCAAAGAGAGTATGCTTTGAAGGGCCATAGACATTTCTATTTTATGACCTTGAATGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTCATCAATCATAGTTGTGAACCTAACTGCCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCATTGAAGAAAATTAAGAAGGGTGAAGAATTGACATTTGATTACAACTATGTAAGGGTTTTTGGTGCCGCTGCCAAAAAATGTTACTGTGGTTCTCCTCGTTGTCGTGGTTATATAGGTGGTGGTGATCCACTCGATGATGAAATGATAGTTCAAGGTGATTCAGATGAAGAATTTCCAGAACCTGTGATGCTCACTGAAGATGGTGAAATTGAGGAGAGTGAACCTGATCCCAGGTACTTTGATAATGTGGATACAAAGTCTTCTAGACATTTGTTAAAAGATAGCGATTTATTGGACAAGTCTACAACTGCTGAAGATGCAAATGGTTCTCCCGAGAAAGAAAGTTCTACGAACCCTGCCTCTTCTGCCGTGTTGCACAGCTCAGTTGATGTGAAAGACTTGAAGGTCAAGTTATCATCTTCTGTTCAAATGGAAGAAATTTCTCAACAAATGGAGGATACAGCAAGCAAACCCTTGCCTGCTGTACAAGAAGGTTGTGCAATTGAATCTGAGTGTGCAGACAAAACTTCTTCCATTAAAAAATTAGAGACTACTTCTTCCCATACAACTGTCAGCAAAGTGTTATCGGATTCTTCTGGTAGTAATCGAGAATCCAAGTCTGAAATAGTCGAAGGCAGGAATGATTTTTCACAATCACCCCTGCCTGTGGACACTCCTCAACTAAATGGATCAGTTAAAAAGGGGAAAGTTCGTGCTAATCCTGCAAATGGTCATAAAGCTGAGCTGACAGCCACCCGATTGCAGGTGTCATCCAAGCACAAAAAAGTTGTAGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGCGAAACTTAATGAGTTGCTAGATGGGGATGGAGGAATAAGCAAAAGAAAAGATGCCACTAAAGGCTACTTGAAGCTTTTGCTTCTCACTGTGGCATCAGGCAATAGAAGCAATGGTGAAGGAATTCAAAGCAATCGAGATCTTTCAATGATTCTTGATGCCCTTCTGAAAACAAAATCTAGAGCCGTGCTCAATGATATAATTAACAAAAACGGTCTGCAGATGTTGCATAACATAATGAAGCAGTACAGGCTGGACTTCAAAAAAATTCCAATACTACGAAAGCTTCTTAAGGTCTTAGAGTTCCTAGCAGCAAACAATATATTGACGTCTGAACATATCTATAGTGGTCCTCCTTGTCATGGAATGGAGAGCTTTAGGAAATCAATGCTGTCTCTGACTGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGTGACAGATGGATTCGCAGATCTGTCAGAAAACCAGGCTATATGGACAGGGATGATAACAGGTTGGAATCTCACAGAAGCTTAAACTGTAACAGATTTTCAGCATCAAACAATCATAGGCACGAGCAGGATTCAAGACCTTCAGAGGCAAATGATTGTGGTCAGCAGTCGATGCTTGTGACAACTTCAGTAGATGGTATTGCCCAGGAGGGCAGCTCTACAGTGTCTCCACATACGGTTGAAAACAATGGGGCAAAAAAACGCAAGCGCAAAAGCCGATGGGATCAACCTGCCGAAACAAATTCAAATTTTGATACGGGTACTATTTCTACTAGTGAAAGCCAGAGCATTCATGATGATGTTCCGCCAGGGTTTTCACATCCAATGCGCCCATTAAATGCTTCATTAAACTCTGGTGATCCTGCTTTGCAAAATGCTAGCCATTCTGGATTTCTGTCTGATTTCATTATTGGTCGTCCAAAAGAGAGATTCAACTCTCGCTTGCCTGTCTCATATGGAATGCCATTGTCCGTTGCCCAGCAATATGGAACACCTCATGCTGAAACCATAGGGTGTTGGTTCACAGCACCAGGCCTGCCTTTCAACCCATTTCCTCCACTACCCCCATATCCACGGGTTGACAGAGGCTCTCAACCTTCTGATACTACTACTGCTATGGCAATTGATCAGCCTGCCGAAGTTCAGAAGGGGGATACCGGTGGCCTGGTTAATCGTTGCTTAGATGATATGATTCCCAGCACAACTGGCTCTAACCCTGATGACGTGAACCTTCCTGGTGAGGGCAACCAACCTGATACGAAGCGGTTGAAGGCTGATGGCTCCAACGATTTGGGAAAGAGGTACTTCAGGCAGCAGAAATGGAATAATTCAAAAATACATCGACCATGGTTCAAGAGGGATGCATTGAGAAGTAGTGGGAACAACTCTAGTGGTGATTTGTGCAGTGTAGGCGTAGATGTAACGAAGGAGTCAAAAGGAACTTCTTCGTCGGAGGATGCAATCTGTAGAGATGAGAAAGGGGCCAATAATATTTAA 6279 0.433 MGSCGESAIGDDPSGGSGIAKSLCPEVPTPLGCSVQESCSEEACDVLGSNVDLPGMTDGCVGGEHVGSASLVDAAEGSRDALADGCENADVLRSEKSAAAEGSRDALADGCENADVLRSDKTAEDGCQNCLENGDVEVSCLKGGELCSEDDFGDEVNFELPSESMTTNNLQKECTQQGDERDDMSSILPSAVDDSAVMEGNNDVADLLADAFNGVFDFRHSEVSLESESMADILVDCNQKNEPGEVMRNEDTLSMVVEKCDASDGMEIDACRQMSPSQGMEVLSGVSYRNTKVESTSDELCAQKDGVDLNSTCEEKIEAVIDNETTVDSYRTLGGSPVVDSLCDALDGIEVDACWKISPSQEGMEVPSGVLHRDTEVESTSDELCAQNDGADWNSTCEEKIEAAIDNEITVNSQRTLGSSPVVHSLCEPTLLGPGSEMKNGILQIEDNSCELNNYSAEGAADSTCKKTFYPESGQPSAVLITNISSKDVPDLLSKSDDVYINDNRVVDNPGQTNSVGKEAVEVDCIIESEQLPSLGNTRRTKSGRKTPTKKASRKCKNKVSVIHPGEGMKINLDSARKKRSCLSKPARSSIWGLLGNIKQFFQKDNELEVSEAMCRELGKPRSKRQNGRAIKSGASSSSLSLVQKQPVSTSSTRVRLKIKFGKEIDLSCSNVLTPEAVGGLASAAYLGSDSGSQRVASNAEDKFSEVVALSNLESLTNDQDKNGLVLDGQIANGHLENTERMEKSDGGAEEPCLTVLPEKLVEALVKPIDIKVMDPGTSPDSEVINSVLEVQVGERHEEDVHHSDLGSSKEFNSNLDVTISKRRKKKDKLIRLGNCITEDGSQDPPGKNRAKHSKNHRCKKNCSDAVNSLELPTSTEISKSLNNRELSTESLPLAGVIELGGSTEALKVEGQMEVKAAWKPSIDHGFSEPHGSENLLSSAKSMRRKLPKSLTSKVGKAKSKASESTSRKRTTSSCKEKQNKPICKSEVKGEGLSLKVKCEAEDHPHPADVVGNHKMDAAGNIDASDNISSVNLSNLDMLHGGGLGEQPLSPRNAWVSCDNCHKWRRIPAALADQIDATNCTWTCKDSSDKAFADCAIPQEKSNAEINAELGLSEGSGEEDVYERSKNYKELEYRPPLVPQQSTFTRIFTNEFLHRSRKTQTIDEIMVCHCKPSQEGKSGCGDECLNRMLNIECVQGTCPCGGRCSNQQFQKRKYASLRWFKSGRKGYGLKAVEDVSKGQFLIEYVGEVLDMHAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCEPNCRTEKWMVNGEICIGLFALKKIKKGEELTFDYNYVRVFGAAAKKCYCGSPRCRGYIGGGDPLDDEMIVQGDSDEEFPEPVMLTEDGEIEESEPDPRYFDNVDTKSSRHLLKDSDLLDKSTTAEDANGSPEKESSTNPASSAVLHSSVDVKDLKVKLSSSVQMEEISQQMEDTASKPLPAVQEGCAIESECADKTSSIKKLETTSSHTTVSKVLSDSSGSNRESKSEIVEGRNDFSQSPLPVDTPQLNGSVKKGKVRANPANGHKAELTATRLQVSSKHKKVVEGSSNGRFEAVQAKLNELLDGDGGISKRKDATKGYLKLLLLTVASGNRSNGEGIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRLDFKKIPILRKLLKVLEFLAANNILTSEHIYSGPPCHGMESFRKSMLSLTEHDDKQVHQIARSFRDRWIRRSVRKPGYMDRDDNRLESHRSLNCNRFSASNNHRHEQDSRPSEANDCGQQSMLVTTSVDGIAQEGSSTVSPHTVENNGAKKRKRKSRWDQPAETNSNFDTGTISTSESQSIHDDVPPGFSHPMRPLNASLNSGDPALQNASHSGFLSDFIIGRPKERFNSRLPVSYGMPLSVAQQYGTPHAETIGCWFTAPGLPFNPFPPLPPYPRVDRGSQPSDTTTAMAIDQPAEVQKGDTGGLVNRCLDDMIPSTTGSNPDDVNLPGEGNQPDTKRLKADGSNDLGKRYFRQQKWNNSKIHRPWFKRDALRSSGNNSSGDLCSVGVDVTKESKGTSSSEDAICRDEKGANNI* 2093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4990 2092 MobiDBLite consensus disorder prediction 543 557 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1991 2005 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1499 1557 - -
Lja1g4990 2092 PANTHER SET DOMAIN PROTEINS 530 2018 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 2050 2072 - -
Lja1g4990 2092 SMART shorttest3 1163 1214 IPR006560 GO:0005634|GO:0018024
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1419 1442 - -
Lja1g4990 2092 CDD SET_SETD2 1214 1356 IPR044437 GO:0010452|GO:0046975
Lja1g4990 2092 MobiDBLite consensus disorder prediction 2073 2092 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 618 645 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 629 645 - -
Lja1g4990 2092 ProSiteProfiles Post-SET domain profile. 1340 1356 IPR003616 -
Lja1g4990 2092 SMART PostSET_3 1340 1356 IPR003616 -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 2049 2092 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1838 1860 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1775 1795 - -
Lja1g4990 2092 Gene3D SET domain 1113 1365 IPR046341 -
Lja1g4990 2092 Pfam CW-type Zinc Finger 1055 1101 IPR011124 GO:0008270
Lja1g4990 2092 Gene3D - 1052 1112 - -
Lja1g4990 2092 SUPERFAMILY SET domain 1144 1353 IPR046341 -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1810 1876 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1529 1543 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1499 1520 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 961 981 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1991 2023 - -
Lja1g4990 2092 ProSiteProfiles Zinc finger CW-type profile. 1049 1103 IPR011124 GO:0008270
Lja1g4990 2092 ProSiteProfiles SET domain profile. 1215 1332 IPR001214 GO:0005515
Lja1g4990 2092 MobiDBLite consensus disorder prediction 923 981 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 1408 1443 - -
Lja1g4990 2092 MobiDBLite consensus disorder prediction 536 557 - -
Lja1g4990 2092 Pfam SET domain 1226 1332 IPR001214 GO:0005515
Lja1g4990 2092 ProSiteProfiles AWS domain profile. 1163 1213 IPR006560 GO:0005634|GO:0018024
Lja1g4990 2092 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 530 2018 - -
Lja1g4990 2092 Pfam AWS domain 1177 1212 IPR006560 GO:0005634|GO:0018024
Lja1g4990 2092 SMART set_7 1215 1338 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4990 Lja-Chr1 69883897 69896703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4990 1198 1355 C2H2 Transcription Factor Family AT2G23740 32.597 2.11e-19 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja1g4990 SET 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4990 - - lja:Lj1g3v0887590.1 3129.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4990 1 69883897 69896703 Lja1g4990 1 69883897 69896703 ECH