Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4987 ATGCAGCAAACGGGTCGTCCCGGAGAAGCCATCAACGGTGGAGGCTACGGTGGCCGGAATGTGGTGGTGGGGGTGAAGCTGGACTCACCCAGCAAAGAGCTTCTCACGTGGGCTCTGGTTAAAGTTGCTGAGCCTGGTGACATCGTTGTTGCTGTGCATGTTCTCAGGGACCATGAAATCGTGAATGGAGATGGAAAAACATCGATTCTTTCGCGTGTCAAGGCATTTAACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTGGGTCTGAAGCTCAAAATTTGCCATGGTTCATCAATGAAGAAAATTTTGGTTCGAGAAGCACATGCTTATTCTGCAACTCATGTTGTTGTTGGGACTTCTCAGCGCCTTCATAATCTCCGGTCATCTACCTCTGTAGCTAAGTACTGTGCTAAAAAGTTGTCCAAGGATTGTTCTATTCTTTGTGTTAACAATGGGAAAGTCATGTTCAAGCGCGACCGGTCGCCATCAAATGTAGCTGCCCTGCAAGATATTGATCGTCATCACAGGAATGGTTTGCTTGGTTCAATTCATTGGAAGCACAGCAAGAGCACAAAAGTAAGAAGTGATGACAATAGTGAGATAGATTCTAATGAGGGAAGTGGCAAAATTTCAAAGAACAGTTTAGCTAAATTTCTTCTGGAGGACTCTACAGAAATAGTTAGAAATCTGAGCTGCATAATTTGCGGCCCGACTCTGGCATTTCCAAGCACTTCTTGCAACCAATCTGCAGAAGGGTGTTGTTCTGTTGATGGTGGCAGTGAGAATTCAATGGCTATAGTGCCTGTAAAGACCACTGATACAGGACAATCTGAATTGCAACCGGGTTGGCCGCTTCTGCGCTGGAGAGTTTTATCAGACAGACAAACTGCTTATAGATCATTGATGGGCCACCAGATCTCTGTTGTCCAGTGGGCGATGAAGTTACCGTGTAGAAATCTATTATATGCTGCAGATCATGATAAAAAGCCCAAAATTTGTGCTCAACATCAAGATCAACCTGTGGCTTTAGATAGTCAAAGTGGCGCTCTTGTTCCGGTAGATGCTGAATTAGGGACCCCTTTTTCGCCTGATTGCAATTCGAGAAAAATTCCTAAAGATTTCGAGGGCCTTCACGAGAAATTCTCATCATCATGCAGATTGTTTGAGTATCAAGAACTTGTATCCGCGACATCAAATTTCTTACTTGAAAACTTGATCGGGAAAGGAGGAAGCGGTAAGGTTTATCGAGGCTGCCTTCCTGATGGCAAGGAACTTGCTGTCAAAATCCTAAAGCCTTCTGATGATGCTCTGAAGGAGTTTCTTTTGGAAATAGAAATTATCACAACTTTGCATCACAAAAACATTATTTCCCTCCTTGGATTCTGCTTTGAGAATGGCAATCTTCTTCTGGTCTATGATTTCTTGCCAAGAGGAAGCCTTGAAGAGAACCTTCATGGGCACAGGAAAAATTCATGTGAGTTTGGCTGGACTGAGAGATATAAGGTAGCAACGGGCGTTGCTGAGGCTTTAGACTATCTGCACTCTAAAGATGATCAACCTGTGATCCATAGGGATGTCAAATCATCAAATGTATTATTATCTGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTGGCTAAGTGGGCATCAACCTCATCATCATATATAACCTGCACAGATGTTGTTGGAACCTTTGGTTATTTGGCTCCTGAGTACTTCATGTATGGAAAGGTAAATGATAAGATTGATGTCTATGCATTTGGCGTCGTGGTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGTGGATTATCCGAAAGGTCAACAAAGTCTTGTTATGTGGGCAACTCCAATTTTGAATAGTGGAAAGGTGTTACAATTGCTAGATCCTAATTTGGGCGATAGCTATGATCTTGAGGAGATGGAAAGGATGGTCTTAGCCGCTACTCTCTGTATCAGACGTTCCCCGAGATCTAGGCCTCAGATGAGCCATGTTTCAAAGCTCCTCCAAGGTGATGCCGATGCAATCAAGTGGGCAAAGTTAGAAGCGAATGCTTCGGAAGGACAAGAAATGGTTGATGATGAAGGGTGTCCACCTAGTAATCTACAGTCACATCTTAATCTTGCACTGCGTGATGTGGAGGATGACTTGCTCTCTATGTGTAGTGTTGCGCCGAGTGTCTCATTGGAGGACTACTTGAAAGGAAGATGGAGCCGTTCATCAAGCTTTGACTGA 2256 0.4384 MQQTGRPGEAINGGGYGGRNVVVGVKLDSPSKELLTWALVKVAEPGDIVVAVHVLRDHEIVNGDGKTSILSRVKAFNSVLAVYEGFCNLKQVGLKLKICHGSSMKKILVREAHAYSATHVVVGTSQRLHNLRSSTSVAKYCAKKLSKDCSILCVNNGKVMFKRDRSPSNVAALQDIDRHHRNGLLGSIHWKHSKSTKVRSDDNSEIDSNEGSGKISKNSLAKFLLEDSTEIVRNLSCIICGPTLAFPSTSCNQSAEGCCSVDGGSENSMAIVPVKTTDTGQSELQPGWPLLRWRVLSDRQTAYRSLMGHQISVVQWAMKLPCRNLLYAADHDKKPKICAQHQDQPVALDSQSGALVPVDAELGTPFSPDCNSRKIPKDFEGLHEKFSSSCRLFEYQELVSATSNFLLENLIGKGGSGKVYRGCLPDGKELAVKILKPSDDALKEFLLEIEIITTLHHKNIISLLGFCFENGNLLLVYDFLPRGSLEENLHGHRKNSCEFGWTERYKVATGVAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSYITCTDVVGTFGYLAPEYFMYGKVNDKIDVYAFGVVVLELLSGRKPISVDYPKGQQSLVMWATPILNSGKVLQLLDPNLGDSYDLEEMERMVLAATLCIRRSPRSRPQMSHVSKLLQGDADAIKWAKLEANASEGQEMVDDEGCPPSNLQSHLNLALRDVEDDLLSMCSVAPSVSLEDYLKGRWSRSSSFD* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4987 751 CDD USP_Like 20 154 - -
Lja1g4987 751 Gene3D HUPs 18 157 IPR014729 -
Lja1g4987 751 Gene3D Phosphorylase Kinase; domain 1 371 479 - -
Lja1g4987 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Lja1g4987 751 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 157 - -
Lja1g4987 751 SMART serkin_6 405 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4987 751 PANTHER OS08G0249100 PROTEIN 14 734 - -
Lja1g4987 751 PANTHER - 14 734 - -
Lja1g4987 751 Pfam Universal stress protein family 19 149 IPR006016 -
Lja1g4987 751 Pfam Protein kinase domain 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4987 751 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Lja1g4987 751 SUPERFAMILY Protein kinase-like (PK-like) 386 676 IPR011009 -
Lja1g4987 751 CDD STKc_IRAK 411 678 - -
Lja1g4987 751 ProSiteProfiles Protein kinase domain profile. 405 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4987 751 Gene3D Transferase(Phosphotransferase) domain 1 480 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4987 Lja-Chr1 69807699 69812220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4987 393 750 Trihelix Transcription Factor Family AT1G70460 39.118 1.85e-74 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja1g4987 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4987 - - aprc:113846853 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4987 1 69807699 69812220 Lja1g4987 1 69807699 69812220 ECH