Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4980 ATGGATGCCGACGAGCAACTCGAATCATCCACGACAGCCAAGGACGCCGACGAGCACCGCACATCACCCACAGTGATCATGGATACCGACGAGCATCTCAAATCACTCACGACAGCCAAGGACGACAGGCACCACATATCAATCACGAAAGACACTAGAATGTCAAATGATTTTGTTGCTGCACAAAGAACTTCAAATAAGGATGATGAATGGAAGCCTCAAGTAGGCCTACTATTCAACACTTTAGAAGAGACATGGAAACTTTGGAATGGTTACGGTGGAAAAATTGGATTTAATGTTCGAAAGCAGTATTTTAACAAGAACAAAGATGGAATGATCTTGACTATTAGATATGTGTGCAGCAAAGAAGGAATTCGTAAACCCGATAAAAGGGATTGCTTGACAACTAACAATCGGCTTGAGACAAGAACCAATTCATATGATTCAGGCATAAAGCAAAGAGCTGTATTTGAACTAATGAGTAGGCAATTTGGCGGGAGAGAAAGCCATGGTTACACACGGTTAGATCAAAAGAATTATCTTCGTGGCAAAAGATTGAGAAACATGGCATATGGGGATGCTGGAAGCTTATTACGACACTTTCAACAAAAACATATAGAAAACCCATCTTCTATCATGGAGTCCAATTAG 651 0.4117 MDADEQLESSTTAKDADEHRTSPTVIMDTDEHLKSLTTAKDDRHHISITKDTRMSNDFVAAQRTSNKDDEWKPQVGLLFNTLEETWKLWNGYGGKIGFNVRKQYFNKNKDGMILTIRYVCSKEGIRKPDKRDCLTTNNRLETRTNSYDSGIKQRAVFELMSRQFGGRESHGYTRLDQKNYLRGKRLRNMAYGDAGSLLRHFQQKHIENPSSIMESN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4980 216 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 33 146 - -
Lja1g4980 216 MobiDBLite consensus disorder prediction 7 26 - -
Lja1g4980 216 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 33 146 - -
Lja1g4980 216 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g4980 216 Pfam FAR1 DNA-binding domain 89 145 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4980 Lja-Chr1 69743559 69745053 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g4980 FAR1 3.9e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4980 - - lja:Lj0g3v0224509.1 290.812