Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4978 ATGCCTCCGCGGCGTGTCCCGATGATGCAAGCGCCGCCGGTGTTGCTGAGTGGCAGCGATTCCGACTCCGACGACCACCACTTCCATTTCATGGCGCGGTGCGTTTCCTGCAATGATGAGTACGACCCAAACGACGACGCCGGAACCTGCAAGGAGTGCTACGAGGAGGCCAACGAGACGGAGCAGGAGATGAAGGAGCAGATCGAAGAATTGAAGGCGAAATCCTCCTTCCTCGCACTCGCTTCCCCCATCGGCGCTCCTTCCTCCACCACCGATGTCATCCTTGTTGCTTCCGCTGACGCTGCCTCTCGCCCCGTTCCCGCTCACAAGGCTGTTCTGGTTAGCCGCTCTCCAGTTTTTAGAGCCATGCTTGAAAATGACATGGAAGAAAGCCGGAGTGGCACCATCAGGATTACTGATATATCATATGATACTCTTTGTTCTTTTGTTAACTATTTATACACTGCTGAAGCAATAGCATCATCCCTTGATAGCCAAATGGCCTGTAACCTATTAGCTTTGGCAGAAAAGTATCAGGTGAATCATCTTAAAACATTCTGTGAGAAGTACTTGATCAGCAAACTGAATTGGGAGAAAGCTCTTGCATTATATTCCTTTGCAAACCAACATAATGCAAACCAATTGCAAGATGCAGCCTTGGAATTTATTATCAATGACAACATGGCAGGCCTCGCTGCACATGAAGATTATCAGGATCTGGTGGACAGTAATCCTCGTCTTGTTGTGGAAATATATGAAGCATATCTTACCAAACAGGTTAATACAGCTGTCCTTAATTTATAG 804 0.4789 MPPRRVPMMQAPPVLLSGSDSDSDDHHFHFMARCVSCNDEYDPNDDAGTCKECYEEANETEQEMKEQIEELKAKSSFLALASPIGAPSSTTDVILVASADAASRPVPAHKAVLVSRSPVFRAMLENDMEESRSGTIRITDISYDTLCSFVNYLYTAEAIASSLDSQMACNLLALAEKYQVNHLKTFCEKYLISKLNWEKALALYSFANQHNANQLQDAALEFIINDNMAGLAAHEDYQDLVDSNPRLVVEIYEAYLTKQVNTAVLNL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4978 267 ProSiteProfiles BTB domain profile. 91 162 IPR000210 GO:0005515
Lja1g4978 267 PANTHER GH01369P 33 263 - -
Lja1g4978 267 SMART BTB_4 91 195 IPR000210 GO:0005515
Lja1g4978 267 CDD BTB_POZ_ZBTB_KLHL-like 91 178 - -
Lja1g4978 267 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g4978 267 Pfam BTB/POZ domain 89 194 IPR000210 GO:0005515
Lja1g4978 267 Gene3D - 196 265 - -
Lja1g4978 267 Gene3D Potassium Channel Kv1.1; Chain A 50 195 IPR011333 -
Lja1g4978 267 PANTHER SPECKLE-TYPE POZ PROTEIN 33 263 - -
Lja1g4978 267 Coils Coil 50 74 - -
Lja1g4978 267 SUPERFAMILY POZ domain 89 193 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g4978 BTB 4.6e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4978 K10523 - gmx:100794443 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4978 1 69722393 69726288 Lja1g4978 1 69722393 69726288 ECH