Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4975 ATGGAATTCCAAAATGGAGAACATGCTGCGAAACTGCTTCAAGCTCAAAGCCACATATGGAACCACATCTTGAGCTTCATAAACTCCATGACCCTTAAATGTGTAGTAGACTTTGTAATACCAGATCTCATTCACAACTATGGAAAACCCATTCCACTCTCACAACTCATTGCTTCATTGCCAATCCACCCATCTAAAACCTGTTGCGTCCCCCGCTTGATGCAAATCATGATCCATTCTGGATTCTTTTCTCAGCATAATGTCACCGAAAATGAGCTGGAAGTCGAGTATATGCTAACCGATACATCTATTCTACTGCTTAAGGATCACCCCTTCAGTGTGGCACCTTTCTTGCATGCCATGCTTGATCCAGTATTGAAGAGCCCATGGCATCAATTCTCAACCTGGTTCAAAAATGATGATCGTACGCCTTTCGAAACGACTCTTGGGATGATAATATGGGAATATGCTGACCGTCACCCCAAACTTAACAAGTTATTCAATGATGGTATGGCCAGCGATTCTCGGTTGATCACGAGTGTGATTGTTGAGAAGTGCAAGGGAATGTTTGATGGATTGAAGTCGTTGGTTGATGTTGGTGGAGGACTGGAGGTACAGGCACGGCGGCGAAGGCCCTTGCCGAATCATTCCCGCATTTGA 660 0.4455 MEFQNGEHAAKLLQAQSHIWNHILSFINSMTLKCVVDFVIPDLIHNYGKPIPLSQLIASLPIHPSKTCCVPRLMQIMIHSGFFSQHNVTENELEVEYMLTDTSILLLKDHPFSVAPFLHAMLDPVLKSPWHQFSTWFKNDDRTPFETTLGMIIWEYADRHPKLNKLFNDGMASDSRLITSVIVEKCKGMFDGLKSLVDVGGGLEVQARRRRPLPNHSRI* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4975 219 PANTHER ORCINOL O-METHYLTRANSFERASE 5 205 - -
Lja1g4975 219 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Lja1g4975 219 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 202 IPR029063 -
Lja1g4975 219 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Lja1g4975 219 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 219 IPR016461 GO:0008168
Lja1g4975 219 Pfam O-methyltransferase domain 130 203 IPR001077 GO:0008171
Lja1g4975 219 PANTHER O-METHYLTRANSFERASE 5 205 IPR016461 GO:0008168
Lja1g4975 219 Gene3D Vaccinia Virus protein VP39 107 208 IPR029063 -
Lja1g4975 219 Gene3D - 2 106 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4975 Lja-Chr1 69634986 69638503 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4975 30 203 Monolignol Biosynthesis Gene Families AT5G54160 28.652 7.14e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4975 - K16040 lja:Lj1g3v0898680.2 454.907