Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4967 ATGGTTGTGCATCATTCAAAGGCAAAGCAGCTTCTTACGGTACTACTTGCTGCAACCCTTTTCATAGCAACATCAACTCAACCCGCCGTGTCACTCCCAAACTGCCAAGAAACCTGTGGCTCCGTCACAATTCCCTTCCCATTTGGCACCACAAAGGGTTGTTCCCTTGACAGCACGTTTCTAATCAGTTGCAACCAAACCTCTTCAAATCCATCACCTTTCTTACTACAAACTAACATAACTATCCTAAACATCTCACTCAACGGCGAGCTTCGCGTTGAATGGCCAGTAGCCAGCGATTGCTACGCCGAGAGAAACAAACGCTTGAATCAAACGTTTCAAGAGTTAAACCTGACAACACCGTTTCATATCTCGTCGAGTCGAAACAAGTTAACGGCGGTTAGCTGCGACACTCTTGGAATACTAGGGGGATTTGATTCTGAGGGAAGGAACTACACCGCGGCGTGCTTGGCTCTGTGCAACGGTCTTGACGATGTCGCTAATGGGTCTTGTTCTGGCGCTGGCTGTTGTGAGACTTCAATACCACGAGGGTTTTCGAGCGTGACCTATCTTTCACAGGCCGTGTTCAACCACACAGGAGTGGTTGACTTCAACCCGTGTGGCTATGCTTTTCTGGTGGAAGATGGAGGCTACCACTTCTCCTCCACCGACCTCATCAAGTTGGAGAAGATGGAGTATCCCGTGGTACTAGCTTGGGCGGTGGGGAACCAAACGTGCCTAGAAGCCAAGAAAGAGGTCTCAAATTCAAGCTATGCGTGTAAAGCAGAGAACAGTGAGTGTTACGATTCACCGGAGGGACCTGGTTACTTTTGTAACTGCTCTTATGGATTTCGGGGAAACCCTTACCTCATTCACGGTTGCCTAGGTAATAAATATTTCTACTACAATTGTTCATGCCCGGAAGGATATGAAGGAGACGGCAAGAAAGATGGAACAAGATGCAGTCGCAAATCCAGTTCCAATTCCAATCTAGAATTCATACTCATAATTGCTTTGACTGTGAGTGTAAGCGTCATAGCACTTCTTGTGGGAAGCTTTTATGTGTATTGGACATTGAAGAAAAGAAAGCACCTTAAACTTAAAGAACAGTTTTTTCAACAAAATGGTGGCTTCTTGTTACAACAACAGATAGCCAGGCATAGAGGGTCAACTGAAATGGTTAAAGTCTTCACTGAGGAGGAGCTAAAGGAGGCCACCAACAACTTCGATAAAGACAAGATCCTCGGCCAAGGTGGACAGGGAACAGTTTACAAAGGACTATTACAAGATGAAAGAATCGTAGCAATAAAAAAGTCAACAATTGGTGACCCGAACCAGATTGAGCAGTTCATCAATGAGGTCATCGTGCTTTCCCAAATCAACCATAGGAATGTGGTGAAGATCTTGGGGTGTTGTTTAGAGACAGAAGTTCCATTGCTTGTTTATGAGTTCATTCCCAATGGCACTGTCTATGAGCATCTTCATGATCAAAGCCATCCTTTGAAACTTAGTTGGAAAACAAGACTGAGAATAGCATCAGAAACTGCTGGAGCCTTGGCATACTTACATTCTGCTGCTTCCACATCAATCATACACAGAGATGTGAAAACCACAAATGTACTACTTGATCATAATCTCACTGCAAAGGTTTCTGATTTTGGAGCTTCTAGGTTTGTTCCTCTTGATAAATGTCAATTGACAACTTTGGTGCAGGGAACACTGGGCTATCTTGACCCTGAATATTTCCACACAAGTCATTTAACTGAGAAGAGTGATGTATATAGCTTTGGGGTTGTCCTAGCAGAGCTACTAACAGGAAAAAAGGCACTCTCCTTTGAAAGGATAGAGGATGATAGAAACCTTGCAGTTTATTTTGTTTCTTCTATGAAAGAGGGTCGGTTACTTCACATTGTAGATACCTATATAATAAATGATGCAAAAAGTGAACAACTAATGGAAGTTGCCATTATTGCAAAAAGGTGTTTAAGCGTGAATGGAGAGGAAAGACCCACAATGAAAGAAGTGGCAATGGAACTTGAGGGAATATTAGTAATAGAACAACACCGATGGGAAAGTGTCAAGAATGTGTCTTCGGAAGAGACTGAAAACTTGCTGAAAGCAGCACCATCTGTTTTAAATATTGAAGATGGAGTTGGGGGAAGTGGCTTGAGTTCTTCTGGATTTGATAGCATAAACAAGATGTCTATGTCATTTTTTGGAGGAAGATGA 2229 0.4316 MVVHHSKAKQLLTVLLAATLFIATSTQPAVSLPNCQETCGSVTIPFPFGTTKGCSLDSTFLISCNQTSSNPSPFLLQTNITILNISLNGELRVEWPVASDCYAERNKRLNQTFQELNLTTPFHISSSRNKLTAVSCDTLGILGGFDSEGRNYTAACLALCNGLDDVANGSCSGAGCCETSIPRGFSSVTYLSQAVFNHTGVVDFNPCGYAFLVEDGGYHFSSTDLIKLEKMEYPVVLAWAVGNQTCLEAKKEVSNSSYACKAENSECYDSPEGPGYFCNCSYGFRGNPYLIHGCLGNKYFYYNCSCPEGYEGDGKKDGTRCSRKSSSNSNLEFILIIALTVSVSVIALLVGSFYVYWTLKKRKHLKLKEQFFQQNGGFLLQQQIARHRGSTEMVKVFTEEELKEATNNFDKDKILGQGGQGTVYKGLLQDERIVAIKKSTIGDPNQIEQFINEVIVLSQINHRNVVKILGCCLETEVPLLVYEFIPNGTVYEHLHDQSHPLKLSWKTRLRIASETAGALAYLHSAASTSIIHRDVKTTNVLLDHNLTAKVSDFGASRFVPLDKCQLTTLVQGTLGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGKKALSFERIEDDRNLAVYFVSSMKEGRLLHIVDTYIINDAKSEQLMEVAIIAKRCLSVNGEERPTMKEVAMELEGILVIEQHRWESVKNVSSEETENLLKAAPSVLNIEDGVGGSGLSSSGFDSINKMSMSFFGGR* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4967 742 CDD STKc_IRAK 415 682 - -
Lja1g4967 742 ProSiteProfiles Protein kinase domain profile. 409 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4967 742 SMART serkin_6 409 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4967 742 Gene3D Transferase(Phosphotransferase) domain 1 485 704 - -
Lja1g4967 742 Gene3D Phosphorylase Kinase; domain 1 383 484 - -
Lja1g4967 742 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 719 IPR045274 GO:0007166
Lja1g4967 742 Pfam Protein tyrosine and serine/threonine kinase 412 679 IPR001245 GO:0004672|GO:0006468
Lja1g4967 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Lja1g4967 742 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 17 719 - -
Lja1g4967 742 SUPERFAMILY Protein kinase-like (PK-like) 392 679 IPR011009 -
Lja1g4967 742 Pfam Wall-associated receptor kinase galacturonan-binding 35 89 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4967 Lja-Chr1 69258428 69263560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4967 16 736 Receptor kinase-like Gene Family AT1G21250 45.166 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g4967 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4967 - - gmx:100798027 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4967 1 69258428 69263560 Lja1g4967 1 69258428 69263560 ECH
Lja1g5797 1 103526494 103530369 Lja1g4967 1 69258428 69263560 PCT