Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4965 ATGATACGGCCACACCCACAGGATATCAAAGCCATGGCTGGGCATCATTCAAAGACGAAGCAGCAGCAGCTTCTTCTGCTGCTACTTGTTTCGACCCTTTTCATCTTAAGAACATCAAGTCAACCCATTTCACTCCCAAACTGCCCAACAAAGTGTGGCAATGTCCCCATTCCCTTCCCATTTGGCACCACTGAGGCTTGTTCCCTTAACAGCACGTTCCTCATCGATTGCAACCAAATCACTTCATCCCCTTTCTTGCCACCAAATAACATGACTGTCCTCGACATCTCCCTCAACCCCGCCGAGCTTCGCGTTGAGTGGCAAGTTGCAAGCAATTGCTTGAGTGAGACAAACGAACTTACAAATGAAACGTCGTCTCAAGGGTTTAACCTGACGACACCTTATTATCTTTCCTCAAGTCGAAACAAGTTTACCATCGTTGGCTGTAATACCGTTGGACTTTTAGCGGGATCTGATTCTGAGGGAAGCTCCCTCACCACTGCGGCGTGCTTGGCTATGTGCGATCCTATCCTAAAAATCTCTAATGGGTCTTGTTCTGGCACTGCTTGTTCTGCGACTTCAATACCCAAAGGGTTAACGAGATCAATATACTATTATTTTTCGTCCTTCTTAAACCAATCAGAAGGAATTGACAACTATAACCCATGCGGGCGTGCTTTTCTGGTGGAAAATGGAGGCTACAACTTCTACATCATGAACCTCACCAAGTTTGAGAAGACAAAGTTCCCTGTGGTGTTAGCTTGGACTGTGGGGAACCAAACGTGCCAAGAAGCTCAAAAAATGAATTCCAGCTATGTGTGTAAAGCAAACCACAGTGAATGTTACAATTCAACTGAGGGACCTGGATACTTTTGTAACTGCACTGATGGATTTCGAGGAAACCCTTACCTCCATGAGGGTTGCGAAGATATTGATGAATGCAAGGAATCCATTGATGACTGCGTTGAGGGGGCAAAATGCATCAACAGTTTAGGGAGCTACAATTGTTTGTGTCAGGAAGGATATGAAGGAGACGGCAAAAATGATAGAACAAAAGATGCAGGATGTAGTCCCAAATCTAGTACCAAATCCAAAAGAGATATCATACTGATAATTGCTTTGATTGTGAGCTTAAGCATCCTAGCACTACTCGTGGGAAGCTTGTATGTCAATAAGAAAAGAAAGTACATCAAACTTAAAGAACGATTTTTTCAACAAAATGGTGGCTTCATGTTACTACAACACATATCTAGCCATAGAGGGTCAACTGAAATGGCTAAGGTTTTCACTGTGGAGGAGCTAAAGGAGGCCACAAACAACTTTGATGAAGGCAAGATACTAGGCCAAGGTGGACAGGGAACAGTTTACAAAGGACTATTGCAAGATAACAGAACTGTAGCAATAAAAAAGTCCAAAATCAGTGACCCGAACCAGATTGAGCAGTTCATCAATGAGGTCATTGTGCTTTCCCAAATTAACCATAGGAATGTGGTGAAGATCTTGGGTTGTTGTTTAGAGACTGAAGTTCCATTGCTTGTTTATGAATTTATTCCCAATGGTACTATTTATGAGCATCTTCATGATCAAACTAACTCTTTGAAACTTTCATGGAAAACAAGATTGAAAATAGCAGCAGAACTTGCTGGAGCCCTAGCATACTTGCATTCTGCAGCTGCTTCTACACCAATCATACATAGAGATGTGAAAACTACAAATATACTACTTGATCACAATCTCACTGCAAAGGTTTCTGATTTTGGAGCTTCTAAGGTTGTTCCTATGGATAAAACTCAATTGACAACTTTGGTGCAGGGGACATGGGGGTATCTTGACCCTGAATACTTCCATACAAGTCTTTTAACTGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCCTTGCGGAGCTACTAACAGGAAAGAAGGCACTCTCCTTTGAAGGGCCAGAGGTTGATAGAAACCTTGCAGTGTATTTTGTTTCTTCAATGAAAGAGGGTCGGTTACTTCACATTGTAGATACCTATATAATAGATGATGCAAGTGTTGAGAAACTAATGGAAGTTGGCAATATTGCAAAAAGGTGTTTAAGGGTAAATGGAGAGGATAGACCCACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATAATAGTTATGGAGCAACACCGATGGGGAAGTATCAATATGCCTTCAGAAGAAACTGAAAACTTGCTCAAAGCAGAATCATCTGTTTTCAATGTTGAAGGTGGCATTGATGGAAGTGGCGTTAGTTCTTCTACCTTTGATAGCATAAAAAAGTTGCAAGTGTCATATTATGGAGGAAGATGA 2325 0.4185 MIRPHPQDIKAMAGHHSKTKQQQLLLLLLVSTLFILRTSSQPISLPNCPTKCGNVPIPFPFGTTEACSLNSTFLIDCNQITSSPFLPPNNMTVLDISLNPAELRVEWQVASNCLSETNELTNETSSQGFNLTTPYYLSSSRNKFTIVGCNTVGLLAGSDSEGSSLTTAACLAMCDPILKISNGSCSGTACSATSIPKGLTRSIYYYFSSFLNQSEGIDNYNPCGRAFLVENGGYNFYIMNLTKFEKTKFPVVLAWTVGNQTCQEAQKMNSSYVCKANHSECYNSTEGPGYFCNCTDGFRGNPYLHEGCEDIDECKESIDDCVEGAKCINSLGSYNCLCQEGYEGDGKNDRTKDAGCSPKSSTKSKRDIILIIALIVSLSILALLVGSLYVNKKRKYIKLKERFFQQNGGFMLLQHISSHRGSTEMAKVFTVEELKEATNNFDEGKILGQGGQGTVYKGLLQDNRTVAIKKSKISDPNQIEQFINEVIVLSQINHRNVVKILGCCLETEVPLLVYEFIPNGTIYEHLHDQTNSLKLSWKTRLKIAAELAGALAYLHSAAASTPIIHRDVKTTNILLDHNLTAKVSDFGASKVVPMDKTQLTTLVQGTWGYLDPEYFHTSLLTEKSDVYSFGVVLAELLTGKKALSFEGPEVDRNLAVYFVSSMKEGRLLHIVDTYIIDDASVEKLMEVGNIAKRCLRVNGEDRPTMKEVAMELEGIIVMEQHRWGSINMPSEETENLLKAESSVFNVEGGIDGSGVSSSTFDSIKKLQVSYYGGR* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4965 774 Gene3D Phosphorylase Kinase; domain 1 415 516 - -
Lja1g4965 774 CDD EGF_CA 310 345 - -
Lja1g4965 774 ProSiteProfiles Protein kinase domain profile. 441 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4965 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Lja1g4965 774 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 34 747 - -
Lja1g4965 774 SMART egfca_6 310 357 IPR001881 GO:0005509
Lja1g4965 774 ProSitePatterns Calcium-binding EGF-like domain signature. 310 336 IPR018097 GO:0005509
Lja1g4965 774 Gene3D Laminin 259 351 - -
Lja1g4965 774 ProSiteProfiles EGF-like domain profile. 310 348 IPR000742 -
Lja1g4965 774 SUPERFAMILY EGF/Laminin 310 345 - -
Lja1g4965 774 CDD STKc_IRAK 447 715 - -
Lja1g4965 774 SMART serkin_6 441 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4965 774 Pfam Wall-associated receptor kinase galacturonan-binding 48 105 IPR025287 GO:0030247
Lja1g4965 774 Pfam Protein tyrosine and serine/threonine kinase 444 712 IPR001245 GO:0004672|GO:0006468
Lja1g4965 774 SUPERFAMILY Protein kinase-like (PK-like) 425 722 IPR011009 -
Lja1g4965 774 Gene3D Transferase(Phosphotransferase) domain 1 517 731 - -
Lja1g4965 774 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 747 IPR045274 GO:0007166
Lja1g4965 774 SMART egf_5 313 357 IPR000742 -
Lja1g4965 774 SMART egf_5 261 309 IPR000742 -
Lja1g4965 774 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 327 338 IPR000152 -
Lja1g4965 774 Pfam Calcium-binding EGF domain 310 347 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4965 Lja-Chr1 69154957 69159485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4965 27 768 Receptor kinase-like Gene Family AT1G21230 44.223 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g4965 PK_Tyr_Ser-Thr 7.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4965 - - gmx:100798027 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4965 1 69154957 69159485 Lja1g4965 1 69154957 69159485 ECH