Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4943 ATGTTCAAGATTTCTCTCAGCAAAATATCACCACCAAAATCCTCAGCCTCCATCCACACCTTAACAAACCGCACCACTCTCTCTCCCATCCATCCCATGGAGGATTCTTCAGCAGGTGATGACACCAAGAACACTTGCCCCCGCGGTCACTGGAGACCTGCCGAGGATGAAAAGCTTCGCCAACTCGTTGAACAATACGGTGCTCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTCAACCAGCTTGATCCAAGAATTAACAGAAGGCCATTCACAGAAGAGGAAGAAGAGAGGCTACTTGCAGCTCACAGAGTTCATGGGAACAAGTGGGCCCTCATAGCAAGGCTCTTCCCAGGTAGAACTGATAATGCTGTGAAGAATCACTGGCATGTCATCATGGCAAGGAAGCAGAGGGAACAGTCCAAGTTATCTGGGAAGAGAAGCTTCCAAGACCTTTATGATGATTCCAACACTTCCATTCATCATTTCCCTGATCACAAGAGACTCAAATCTCATCAAGACCTTTTGTTCAGCACAAGAATTGGGTTAGAGAATGGAAGATTCTTTGACTTCAGGTCCCACATCGAGAAAGTTAGGAATAAGTTAGTTTCAGATACTCCTTCTAGTTCTCTTGCCTCTTGGAATTTTGCATCTGTTCCAATAACCACCTCAAACAGTTATCCTATTATGGATTCAGTTAGAAAATTAGGAACTTCCTCTGATGCTAATTATCTCTTGGAATGTTCCAGAAGCTCATCAGATAGATTTGTTTATAGAATTTGTCCAAATCCTACTACCACTACTTCATTCTCCCTTCCAAATTACAAGAGGGTTGTTCCAAATCCCTTTGGATGTTTAGGTTCTTCTGATGATCATGGAAGGATAGAGAGGGACTTGATGAGTTTCTGTGATAACTCATCCACATTGAGCAAGTTGAGAGCTTCGGCGGAGGAGAAACAGCAAGAAGATTATGAAGCTAGTGTTGAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCCCTTCATCATCATAA 1080 0.4306 MFKISLSKISPPKSSASIHTLTNRTTLSPIHPMEDSSAGDDTKNTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRVHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLSGKRSFQDLYDDSNTSIHHFPDHKRLKSHQDLLFSTRIGLENGRFFDFRSHIEKVRNKLVSDTPSSSLASWNFASVPITTSNSYPIMDSVRKLGTSSDANYLLECSRSSSDRFVYRICPNPTTTTSFSLPNYKRVVPNPFGCLGSSDDHGRIERDLMSFCDNSSTLSKLRASAEEKQQEDYEASVEHKEVPFIDFLGVGVPSSS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4943 359 Gene3D - 102 171 - -
Lja1g4943 359 SUPERFAMILY Homeodomain-like 47 141 IPR009057 -
Lja1g4943 359 PANTHER MYB PROTEIN-RELATED 35 355 - -
Lja1g4943 359 Pfam Myb-like DNA-binding domain 51 111 - -
Lja1g4943 359 MobiDBLite consensus disorder prediction 8 32 - -
Lja1g4943 359 MobiDBLite consensus disorder prediction 1 50 - -
Lja1g4943 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 94 IPR017930 -
Lja1g4943 359 SMART sant 47 96 IPR001005 -
Lja1g4943 359 SMART sant 99 147 IPR001005 -
Lja1g4943 359 CDD SANT 111 142 IPR001005 -
Lja1g4943 359 ProSiteProfiles Myb-like domain profile. 48 94 IPR001005 -
Lja1g4943 359 CDD SANT 51 92 IPR001005 -
Lja1g4943 359 PANTHER TRANSCRIPTION FACTOR MYB56 35 355 - -
Lja1g4943 359 Gene3D - 48 99 - -
Lja1g4943 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Lja1g4943 359 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4943 Lja-Chr1 68492310 68493876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4943 46 155 MYB Transcription Factor Family AT1G17950 83.636 6.43e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g4943 Myb_DNA-bind_6 2.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4943 1 68492310 68493876 Lja1g4943 1 68492310 68493876 ECH