Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4942 ATGTCATTAGTTAGATCTTCTGAGCTTACTCCTACATCATGTAAAAATGCTAAGCTCTACTCACTAAAGGGAACTGATATTAATCATAGAAGCATGTATACCACCGATACTTACTCCAGTGAGAGTTACGAGAAGCACTTCCACGACTCACAAACAGAACAGATAGAACCATCTTGTTGCAGCATGTCTAGCAGTTCAATTCACACTGATGGTGCCTCTTCTTGCCAGATTAGAGCTAGTTCAGATTTGTTGGAAAATGGAAGCCTGGATTCACCTGATGATGATAGTCTCATGAAATTAAAACTACAAGCATTGGAGAGGGCATTGCTTGTTGATAGTGATGCTGAGGCGGAGGAGGAGGAAGACGATGTGTTTGAGACTGTGCAAAGCATGGAAATAGATCATGACATTTCTGAGTGGGCTGATCCCATTCAGAATATGAAGCTCCATGACTCGCCAAAGGAGTATTCTTCTTCATATTCCAATATTACCAGCATCAGTAGCACCAAAGATATATCGCAAATTTCTCGGACCCCCAACCAACTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAATGAAGAGGAAGCTTCATCAATGATAAATGATCTCCGAAAGATGGTCTCAATTCAGGGAGAGCCTTCCAAAAGAATTGCAGCCTATATGGTGGAAGGACTGGCCGCTCGCCTGGCTGAATCCGGCAAGAGTATTTATAAAGCTCTAAGATGCAAAGAACCTCCTTCTGCGGACCGTCTTGCAGCAATGCAGATACTGTTTGAGGTTTGCCCATGTTTTAAATTTGGATTCATTGCTGCTAACAATGCAATCACAGAGGCAGTTAAAGATGACATGAACATTCATATAATAGATTTTGACATCAATCAAGGAAGTCAGTACATAAGTCTAATTCAAACACTTGCTTCAAGGTCCAATAAGCCATCCCGTGTGAGGTTGACCGGAGTTGATGATCCCGAGTCGGTGCAGCGATCCGTTGGAGGCCTAACAATCATAGGACTAAGACTTGAGAAACTGGCGGAAGCACTTGGTTTGCCATTTGAGTTCCGAGCAGTGGTGTCGAGGACTTCCATTGTCACCCCATCAATGCTCAGTTGTCGTCCCGGAGAAGCTCTTGTCGTTAACTTTGCATTCCAGCTTCATCACATGCCTGATGAGAGTGTTTCAACAGTAAATGAGCGGGACCAGCTTCTCCGCTTAGTAAAGAGCCTGAATCCGAAGCTTGTAACGGTTGTGGAGCAAGATGTGAACACTAACACCGCCCCCTTCTTGCAGAGATTTGTTGAAGCCTACAAGTACTACTCTGCTGTGTTTGAGTCACTTGATATTACTCTTCCTAGAGAGAGTCAGGACAGGATGAATGTTGAAAGGCAGTGCTTAGCGAGGGACATTGTCAATGTGGTTGCGTGCGAAGGTGAGGATAGGATCGAAAGGTATGAAGTTGCAGGGAAATGGAGAGCAAGGATGACAATGGCTGGCTTCACTCCATCCCCAATGAGCGCAAATGTCGGCGATGAAATCAGGAAACTCATTAAGTTGTACTGTGACAGGTACAAGATAAAGGAGGAAATGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCATGGAGATGA 1650 0.4406 MSLVRSSELTPTSCKNAKLYSLKGTDINHRSMYTTDTYSSESYEKHFHDSQTEQIEPSCCSMSSSSIHTDGASSCQIRASSDLLENGSLDSPDDDSLMKLKLQALERALLVDSDAEAEEEEDDVFETVQSMEIDHDISEWADPIQNMKLHDSPKEYSSSYSNITSISSTKDISQISRTPNQLLYECAIALSEGNEEEASSMINDLRKMVSIQGEPSKRIAAYMVEGLAARLAESGKSIYKALRCKEPPSADRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMNIHIIDFDINQGSQYISLIQTLASRSNKPSRVRLTGVDDPESVQRSVGGLTIIGLRLEKLAEALGLPFEFRAVVSRTSIVTPSMLSCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVEAYKYYSAVFESLDITLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTPSPMSANVGDEIRKLIKLYCDRYKIKEEMGALHFGWEDKNLIVASAWR* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4942 549 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 90 548 IPR030011 GO:0003700|GO:0005634
Lja1g4942 549 Pfam GRAS domain family 181 549 IPR005202 -
Lja1g4942 549 ProSiteProfiles GRAS family profile. 170 549 IPR005202 -
Lja1g4942 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 90 548 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4942 Lja-Chr1 68291193 68295045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4942 1 549 GRAS Transcription Factor Family AT1G21450 59.022 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g4942 GRAS 2.5e-134 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4942 - - gmx:100788103 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4942 1 68291193 68295045 Lja1g4942 1 68291193 68295045 ECH
Lja1g5773 1 102666561 102670522 Lja1g4942 1 68291193 68295045 PCT