Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4941 ATGGTGGCTCCGGGTCCAGGGCCACCCACACCCATTGGTGGTGGCCAGTCCGTTTCGCCTTCTCTTTTGAGATCAAATTCTGGAATGCTAGGAGCTCAAGGAGGTCCCATGCCTTCACAGTCTTCTTTCCCTTCGCTTGTGTCGCCGCGTACGCAGTTCAATGGCATGAACATTTTAGGAAATATGACAAATGTAACTTCTATGCTGAATCAATCTTTCCCAAATGGAGTTCAAAATCCGGCACTCTCTGGTCCAGGTAGTAGCCAGCTTGGAGGGATTGATACTGGAGCTGAAACAGACCCACTCTCTAGTGTGGGCAATGGAATGAGCTTTAGTAATGTTTCATCCTCATTTGTACAATCAAATATGGGGAATGCTGGTCCCTCCGGTCAAGGCCAGGGTCAACAATTTTCAAACCCTTCTAGCAACCAGCTGTTGCCGGATCAACAACATTCCCAACAGCTTGAACCTCAGAATTTCCAACACAATCAGCAGTCGATGCAACAGTTCTCTTCTCCTCTGAATGCGCAGCAGCATTATCAATCAATTCGAGGAGGAATAGGTGGTATTGGACCTGTAAAGTTGGAGCCCCAGGTAAACAACGATCAACTTGGTCAGCAGCAGCAACAGTTGCAATCATTGAGAAATCTTGCTCCAGTCAAAATGGAGCAACAACAGCTTCATTCAATGAGAAATTTGCCACCTGTTAAGATGGAGCCCCAACATTCTGATCAACCAATGTTTTTGCAACAGCAACAACAGCAGCAATTCCTCCACATGTCTAGGCAATCTTCTCAGGCTGCTGCTGCTCAGATCAACCTTTTCCACCATCAGAGGCTTTTGCAGTTACAGCAACAGCAACAGCAACAGCAACAACAACAACTCTTGAAGGCAATGCCTCAACAACGGTCTCAACTACAACAGCAATTTCAACAGCAAAATATGCCTGTGAGGTCTCCTGTTAAACCAGTATATGAACCGGGGATGTGTGCTAGGCGGTTGACACATTACATGTATCAGCAACAACATCGACCTGAAGATAACAATATCGAGTTCTGGAGGAAGTTTGTTGCTGAGTATTTTGCTCCCAATGCCAAGAAGAAGTGGTGTGTTTCCATGTATGGAAGTGGCAGACAAACAACTGGGGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGTAATCGCAAACCTGGCCGTGGGTTTGAGGCAACTTTTGAGGTTCTTCCCAGGCTTTTCAAGATAAAGTATGAAAGTGGTACTTTGGAAGAGCTACTTTATGTTGACATGCCCCGTGAATACCATAATGCCTCTGGCCAGATTGTTCTAGATTATGCAAAAGCAATACAAGAAAGTGTTTTTGATCAACTTCGTGTTGTTCGTGACGGTCAACTTCGTATAGTCTTCTCTCCAGACTTAAAGATATGCTCGTGGGAATTTTGTGCTAGGCGCCATGAAGAGCTTATCCCCAGAAGATTGTTAATACCTCAGGTTAGTCAGCTTGGAGCAGTGGCTCAAAAATACCAGGCTTTTACTCAAAATGCAACGCCCAATATATCTGTTCCAGAGTTACAAAATAATTGCAATATGTTTGTTGCATCAGCCCGTCAATTGGCTAAAGCCTTAGAAGTTCCTTTAGTTAATGATTTAGGATATACGAAGAGATACGTCCGCTGCCTACAGATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTACAGCAGAGAAACAGGGACAGGACCTATGGAGAGCTTAGCCAAATTCCCTCGGAGAACCAGTGGTTCATCTGGAATTCGCAGTCAATCACAACAGCATGGAGATCAATTACAGCAGCAGCAGCAGCAGCAGCAGCAACAACCGCAAATGGTGGGCCATAACTCAAATGGTGATCAAAACTCATCACAAGCTGCTGCCATGCAAATCACTTCCAGCAATGGCATGGTTAGTGTAAATAACGCTGTCAACTCCGCATCCACATCAACTACCACAAGCACTATTGTTGGCCTTCTCCACCAGAACTCTATGAATTCTAGACAACAAAATTCAATGAGCAATGCAAACAGTCCATACGGAGGTAGTTCTGCTCAGGTTCCATCCCCAGGTTCCTCCAGTACTGTGCCACAGTCCCAGCCAAACTCATCTCCTTTTCATTCACCTACACCATCCTCTTCAAATAACCCTCCACAAACATCTCACCCTGCTTTATCGCCTGCCAATCACATGAGCACAACAAACCCGCCAGCTAATATTCCCATGCAACAAAACCAACAACAGTCATCACTTTCCGGTGAAGCTGATCCTAACGATGCGCAGAGCTCCGTCCAGAAAATCATACATGAGATGATGATGTCATCCCAGATAAATGGCAGCGGTGGAATGGGAGGTGTTGGTTCTCTTGGAAATGACATGAAGAATATAAATGGTGTGCTGCAAGGGAATGCCCATATAGGACACAACACCAGCAATGGCCCGCTGAACAGTAATAATTCGGGTGTCGGGGTTGGTGGTTATGGAACAATGGGTCTTGGTCAATCCTCTATGCCTAATGGAATGAGAGCTGCAATGTTAAATAATTCAGTCATGAATGGAAGAGGAGGAATGTCATCTAGGGATCAAGCTATGAATCACCAACAAGATATGTCAAACCAACTACTTAGTGGGCTAGGAGCAGTAAATGGGTTTAGTAATCTTCAATTTGATTGGAAACCTTCTCCTTGA 2724 0.4479 MVAPGPGPPTPIGGGQSVSPSLLRSNSGMLGAQGGPMPSQSSFPSLVSPRTQFNGMNILGNMTNVTSMLNQSFPNGVQNPALSGPGSSQLGGIDTGAETDPLSSVGNGMSFSNVSSSFVQSNMGNAGPSGQGQGQQFSNPSSNQLLPDQQHSQQLEPQNFQHNQQSMQQFSSPLNAQQHYQSIRGGIGGIGPVKLEPQVNNDQLGQQQQQLQSLRNLAPVKMEQQQLHSMRNLPPVKMEPQHSDQPMFLQQQQQQQFLHMSRQSSQAAAAQINLFHHQRLLQLQQQQQQQQQQQLLKAMPQQRSQLQQQFQQQNMPVRSPVKPVYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYVDMPREYHNASGQIVLDYAKAIQESVFDQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAVAQKYQAFTQNATPNISVPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMESLAKFPRRTSGSSGIRSQSQQHGDQLQQQQQQQQQQPQMVGHNSNGDQNSSQAAAMQITSSNGMVSVNNAVNSASTSTTTSTIVGLLHQNSMNSRQQNSMSNANSPYGGSSAQVPSPGSSSTVPQSQPNSSPFHSPTPSSSNNPPQTSHPALSPANHMSTTNPPANIPMQQNQQQSSLSGEADPNDAQSSVQKIIHEMMMSSQINGSGGMGGVGSLGNDMKNINGVLQGNAHIGHNTSNGPLNSNNSGVGVGGYGTMGLGQSSMPNGMRAAMLNNSVMNGRGGMSSRDQAMNHQQDMSNQLLSGLGAVNGFSNLQFDWKPSP* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4941 907 MobiDBLite consensus disorder prediction 591 639 - -
Lja1g4941 907 PANTHER LIM DOMAIN-BINDING PROTEIN 6 906 IPR029005 -
Lja1g4941 907 MobiDBLite consensus disorder prediction 70 156 - -
Lja1g4941 907 Pfam LIM-domain binding protein 333 587 IPR029005 -
Lja1g4941 907 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 6 906 - -
Lja1g4941 907 MobiDBLite consensus disorder prediction 1 48 - -
Lja1g4941 907 MobiDBLite consensus disorder prediction 14 48 - -
Lja1g4941 907 MobiDBLite consensus disorder prediction 577 639 - -
Lja1g4941 907 MobiDBLite consensus disorder prediction 678 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4941 Lja-Chr1 68278246 68287598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4941 8 903 C2H2 Transcription Factor Family AT1G43850 60.507 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4941 - - gmx:100799771 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4941 1 68278246 68287598 Lja1g4941 1 68278246 68287598 ECH