Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4933 ATGTCGAACACAGCTGGTCAGGTCATCAAGTGCAGAGCCGCGGTTTCATGGGAGGCAGGGAAGCCGCTTGTGATTGAAGAAGTGGAGGTGGCGCCACCGCTGGCCGGTGAAGTGCGCCTGAAGATACTCTACACCTCCCTTTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGGGAAGGAGTGACTCATCTGAAACCAGGGGACCATGCCCTTCCTGTATTCACAGGAGAATGTGGTGAATGCCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGATAGGGGTGTCATGATTAGTGACAACCAGTCAAGATTCTCCATAAAAGGAAAACCCATATACCATTTTGTTGGTACCTCAACATTCAGTGAATACACTGTTCTTCATGCTGGATGTCTTGGTGCTACTGTCAATGTTGCTAAACCAAAACCTGGTTCTTCTATTGCCATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGAGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCCAGCCGATTTGAAGAAGCTAAGAAGTTTGGAGTTAATGAGTTCGTGAACCCAAAAGATCATGATAAACCTGTACAAGAGGTAATTGCTGAAATGACCAATGGAGGTGTGGATCGTGCTGTTGAATGCACTGGCAGCATCCAGGCCATGATCTCTGCATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAGCAAAGATGATGCATTCAAAACTCATCCTGTGAATTTCTTGAATGAGAGGACTCTTAAGGGCACCTTCTATGGCAACTACAAACCCCGCACTGATCTTCCTAATGTTGTAGAGATGTACATGAGAGGGGAACTTGAACTGGAGAAATTCATCACCCACACAGTTTCGTTCTCTGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGAGAGTCCATCAGATGCATCATCCGCATGGAGGAGTAA 1074 0.4609 MSNTAGQVIKCRAAVSWEAGKPLVIEEVEVAPPLAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMISDNQSRFSIKGKPIYHFVGTSTFSEYTVLHAGCLGATVNVAKPKPGSSIAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPNVVEMYMRGELELEKFITHTVSFSEINKAFDYMLKGESIRCIIRMEE* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4933 357 CDD alcohol_DH_plants 9 354 - -
Lja1g4933 357 PANTHER ALCOHOL DEHYDROGENASE 161 355 - -
Lja1g4933 357 Pfam Alcohol dehydrogenase GroES-like domain 36 157 IPR013154 -
Lja1g4933 357 Gene3D - 19 160 - -
Lja1g4933 357 Gene3D - 299 347 - -
Lja1g4933 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Lja1g4933 357 Gene3D - 161 298 - -
Lja1g4933 357 PANTHER ALCOHOL DEHYDROGENASE 4 161 - -
Lja1g4933 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 160 320 IPR036291 -
Lja1g4933 357 SUPERFAMILY GroES-like 4 177 IPR011032 -
Lja1g4933 357 Pfam Zinc-binding dehydrogenase 183 314 IPR013149 -
Lja1g4933 357 PANTHER ALCOHOL DEHYDROGENASE-RELATED 161 355 - -
Lja1g4933 357 SUPERFAMILY GroES-like 305 354 IPR011032 -
Lja1g4933 357 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4933 Lja-Chr1 67975490 67984226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4933 37 304 Monolignol Biosynthesis Gene Families AT1G72680 25.939 4.60e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4933 K18857 - gmx:100783858 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4933 1 67975490 67984226 Lja1g4933 1 67975490 67984226 ECH