Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4931 ATGGGAGGGTCTTGGGTAGTTGGGTTTTTGGTTGTGGTTGGATTTGCCTGCTTGGTGGGCCCTGTTTGGGTAGATGGGTACCCTGCTGAGGATCTGGTGGTGAAATTGCCTGGTCAACCCAAGGTTGGGTTCAGGCAATATGCTGGATATGTTGATATTGATGTCAAGCATGGAAAGAGCTTGTTCTACTATTTTGTGGAGGCTGAACATGACCATGGCAACAAGCCCCTCACCCTTTGGCTCAATGGAGGTCCGGGGTGTTCTTCAATTGGAGGAGGTGCCTTTACTGAACTAGGTCCCTTTTTTCCTAGTGGTGATGGACGTGGTCTCAGGAGAAATTCAAAGGCTTGGAATAAAGCATCTAACCTCCTCTTTGTGGAGTCTCCTGCTGGTGTTGGTTGGTCATACTCAAATACAACTTCTGATTATAACACTGGAGATGCCTCCTCAGCCAATGATCTGCTTTTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTACATACCACAGTTAGCTAATGCTGTTCTGGATTACAATGCTCATTCAACTAGCTTCAAATTCAACATTAAAGGACTTGCTATTGGAAACCCACTTCTGAAACTGGAACGTGATGCAGAAGCAACATATGAATATTTCTGGTCTCATGGAATGATTTCTGATGAAATTGGCATGGCGATTATGAATGATTGTGATTTTGATGATTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATGCAACGATGCCATGAACAAAGCTAATGAGATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGCTATCCATCCATAGTTCAACAGGAACTGAGGCTGAAAAAAATTGCTACTAAAATAAGCATAGGTGTTGATGTCTGTATGAGTTTTGAAAGAAGCCTGTACTTCAACCTCCCTGAAGTTCAGAAGGCTCTGCATGCAAACCGTACCAATCTTCCATATAAGTGGTCCATGTGCAGTCCGGTTTTGAATTATAGCGAAACTGATCCTAAAATCAATATCCTTCCAATTCTCAAACGGATCGTTAAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTCGGTTCTCGAACACTCATTCGTGAACTAGCTCATGAACTGCAGTACAAGGTTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACAGAATATGGAAATTTGTTGACTTTCGCCACAGTAAGGGGAGCTGCTCACATGGTACCTTATGCACAGCCATCAAGAGCACTTGGTCTATTCAGTGCCTTTGTGCGTGGTAGCAGATTGCCAAACACAACACGCCCTTCAATTGATGAATAA 1422 0.4339 MGGSWVVGFLVVVGFACLVGPVWVDGYPAEDLVVKLPGQPKVGFRQYAGYVDIDVKHGKSLFYYFVEAEHDHGNKPLTLWLNGGPGCSSIGGGAFTELGPFFPSGDGRGLRRNSKAWNKASNLLFVESPAGVGWSYSNTTSDYNTGDASSANDLLLFMLKWYEKFPSYRSRKLFLTGESYAGHYIPQLANAVLDYNAHSTSFKFNIKGLAIGNPLLKLERDAEATYEYFWSHGMISDEIGMAIMNDCDFDDYTFTSTHNESKACNDAMNKANEIVGDYINNYDVILDVCYPSIVQQELRLKKIATKISIGVDVCMSFERSLYFNLPEVQKALHANRTNLPYKWSMCSPVLNYSETDPKINILPILKRIVKNHIPVWVFSGDQDSVVPLLGSRTLIRELAHELQYKVTVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALGLFSAFVRGSRLPNTTRPSIDE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4931 473 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Lja1g4931 473 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Lja1g4931 473 Gene3D - 361 460 - -
Lja1g4931 473 SUPERFAMILY alpha/beta-Hydrolases 29 463 IPR029058 -
Lja1g4931 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Lja1g4931 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Lja1g4931 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Lja1g4931 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Lja1g4931 473 PANTHER CARBOXYPEPTIDASE 6 467 - -
Lja1g4931 473 Pfam Serine carboxypeptidase 38 460 IPR001563 GO:0004185|GO:0006508
Lja1g4931 473 Gene3D - 314 350 - -
Lja1g4931 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 467 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4931 Lja-Chr1 67943220 67947862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4931 324 463 Calmodulin-binding Proteins AT2G22960 27.143 6.34e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4931 K16297 - gmx:100815723 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4931 1 67943220 67947862 Lja1g4931 1 67943220 67947862 ECH