Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4930 ATGGGAGGGTCTTGGTTTTTTGGGGTTTTGGTGGGATTTGCCTGCTTGGTGGGCCCTGTTTGTGTAGATGGGTACCCAATTGAGGATCTAGTGGTGAATTTGCCTGGTCAACCCAAGGTTGGGTTCAGGCAATATGCTGGGTATGTTGATATTGATGTCAAGCATGGAAAGAGCTTGTTCTACTATTTTGTGGAGGCTGAACATGACCATGGCAACAAGCCTCTCACTCTTTGGCTCAATGGAGGTCCTGGGTGTTCTTCAATTGGAGGAGGTGGTTTTACTGAATTAGGTCCTTTTTTTCCTAGTGGTGATGGACGTGGTCTCAGAAGAAATTCAAAGTCTTGGAATAAAGCATCTAACCTTCTCTTTGTGGATTCTCCTGCTGGTGTTGGTTGGTCATATTCAAATACTACTTCTGATTATATATCTGGAGATGCCTCCACAGCCAATGATATGCTTTTGTTCTTCCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATGTACCACAGTTAGCTAATGCTATTCTGGATTACAATGCTCATTCAACTAGCTTCAAATTCAATATTAAAGGACTTGCTATTGGAAACCCACTTCTTAAACTGGAACGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCTGATGAAATTGGCATGGCGGTTTTGAATGATTGTGATTTTGATGATTACACCTTCGACTCTACTCACAATGAGTCTAAATCATGCAACGATGCCATGAACAAAGCTAATGAAGTTGTTGGTGATTACATAAACATCTATGATGTGATTCTGGATGTGTGCTATCCATCCATATTTGAACAGGAACTGAGGCTGAAAAAAATTGCAACAAAATTAAGCATAGGTGTTGATGTCTGTATGCGTTATGAAAGAGGTATATACTTCAACCTCCCTGAAGTTCAGAAGGCTCTCCATGCAAACAACACCAATCTTCCATATCTATGGTACTTGTGCAGCCCAGTTTTGAATTATAGTGGAACTGATCCTAACATCAATATGCTTCCAATTCTCAAAAGGATAGTTCAGAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTTCCATTACTCGGTTCTCGAACACTCATTCGTGAACTAGCTCATGAGCTGCAGTTCAATGTTACAGTCCCATATAGGGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACAGAATATGGAAATTTGTTGACTTTCGCCACAGTAAGGGGAGCTGCTCACATGGTACCTTATGCACAGCCTTCAAGAGCACTTGGTCTATTCACTGCCTTTGTGCGTGGTAGCAGATTGCCAAACACAACACGCCCTTCAATTGATGAATAA 1416 0.4174 MGGSWFFGVLVGFACLVGPVCVDGYPIEDLVVNLPGQPKVGFRQYAGYVDIDVKHGKSLFYYFVEAEHDHGNKPLTLWLNGGPGCSSIGGGGFTELGPFFPSGDGRGLRRNSKSWNKASNLLFVDSPAGVGWSYSNTTSDYISGDASTANDMLLFFLKWYEKFPSYRSRKLFLTGESYAGHYVPQLANAILDYNAHSTSFKFNIKGLAIGNPLLKLERDAQATYEYFWSHGMISDEIGMAVLNDCDFDDYTFDSTHNESKSCNDAMNKANEVVGDYINIYDVILDVCYPSIFEQELRLKKIATKLSIGVDVCMRYERGIYFNLPEVQKALHANNTNLPYLWYLCSPVLNYSGTDPNINMLPILKRIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHELQFNVTVPYRAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALGLFTAFVRGSRLPNTTRPSIDE* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4930 471 Gene3D - 359 458 - -
Lja1g4930 471 Gene3D alpha/beta hydrolase 27 288 IPR029058 -
Lja1g4930 471 SUPERFAMILY alpha/beta-Hydrolases 29 461 IPR029058 -
Lja1g4930 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Lja1g4930 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Lja1g4930 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Lja1g4930 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Lja1g4930 471 Pfam Serine carboxypeptidase 36 458 IPR001563 GO:0004185|GO:0006508
Lja1g4930 471 Gene3D - 312 348 - -
Lja1g4930 471 PANTHER CARBOXYPEPTIDASE 8 465 - -
Lja1g4930 471 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Lja1g4930 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 465 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4930 Lja-Chr1 67834233 67846659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4930 322 461 Calmodulin-binding Proteins AT2G22960 26.429 4.10e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4930 K16297 - gmx:100815723 815.068