Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4922 ATGTCGAGCACAGATGGTCAGGTCATCAAATGCAGAGCTGCGGTTTCATGGGAGGCGGGGAAGCCGCTTGTGATTGAAGAAGTGGAGGTGGCGCCACCGCAAGCCGGAGAAGTGCGTCTCAAGATACTCTACACATCCCTCTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGCATTGTGGAGAGTGTAGGCGAAGGTGTTACTCATCTGAAACCAGGGGACCATGCTCTCCCAGTATTCACAGGAGAATGTGGTGAATGCCCACATTGCAAATCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGATAGGGGTGTCATGATCAGTGACAACCAGAGTAGATTCTCCATAAAAGGAAAACCCATATACCATTTTGTTGGTACCTCAACATTCAGTGAATACACAGTTCTTCATGCTGGATGTTTTGGTGCCACTGTCAATGTTGCAAAACCAAAACCTGGTTCTTCTATTGCCATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCGGAAGGGGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCCAGCCGATTTGAAGAAGCCAAGAAGTTTGGAGTCAATGAGTTCGTGAACCCAAAAGATCACGACAAACCTGTACAAGAGGTAATTGCTGAAATGACCAATGGAGGTGTGGATCGGGCTGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCTGTGAATTTCTTGAATGAGAGGACACTTAAGGGCACCTTCTATGGCAACTACAAACCCCGCACTGATCTTCCTAATGTCGTGGAGAAGTACATGAAAGGGGAACTTGAACTGGAGAAATTCATCACCCACACAGTTCCATTCTCAGAGATCAACAAAGCTTTTGACTACATGTTGAAAGGGCAGTCCATCAGATGCATCATCCGCATGGAGGAGTAA 1017 0.4651 MSSTDGQVIKCRAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMISDNQSRFSIKGKPIYHFVGTSTFSEYTVLHAGCFGATVNVAKPKPGSSIAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAEMTNGGVDRAGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDYMLKGQSIRCIIRMEE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4922 338 PANTHER ALCOHOL DEHYDROGENASE 4 160 - -
Lja1g4922 338 SUPERFAMILY GroES-like 4 160 IPR011032 -
Lja1g4922 338 PANTHER ALCOHOL DEHYDROGENASE-RELATED 161 246 - -
Lja1g4922 338 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 160 - -
Lja1g4922 338 Pfam Zinc-binding dehydrogenase 183 244 IPR013149 -
Lja1g4922 338 SUPERFAMILY GroES-like 286 335 IPR011032 -
Lja1g4922 338 CDD alcohol_DH_plants 9 335 - -
Lja1g4922 338 PANTHER ALCOHOL DEHYDROGENASE 161 246 - -
Lja1g4922 338 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Lja1g4922 338 Gene3D - 17 332 - -
Lja1g4922 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 160 300 IPR036291 -
Lja1g4922 338 Pfam Alcohol dehydrogenase GroES-like domain 36 157 IPR013154 -
Lja1g4922 338 PANTHER ALCOHOL DEHYDROGENASE-RELATED 247 336 - -
Lja1g4922 338 PANTHER ALCOHOL DEHYDROGENASE 247 336 - -
Lja1g4922 338 Gene3D - 161 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4922 Lja-Chr1 67744866 67747248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4922 1 326 Monolignol Biosynthesis Gene Families AT1G72680 24.011 7.17e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4922 K18857 - gmx:100783858 624.78