Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4904 ATGTCAAGCAATGTAGCATTTACTCTCTTTATCTTCTTTCTTAATATCTCATTGTTTCCAGCTCTGAACCAAGAAGGTCTCTCTCTACTTTCATGGCTTTCAACCTTCAATTCCACCACAAACTCTTCCTCCACCTTCTCTTCATGGAATCCAACACACAAAAATCCTTGCAGATGGGACTATGTGAAATGTTCAGCAGAAGGTTTTGTTGAAGAGATCATAATAACATCAATTGATCTTCGTAGCGGCTTCCCTACACAGCTTCTTTCTTTTGGTAATCTCACCATACTTGTTATCTCAAATGGAAATCTCACTGGTGAGATTCCAAGTTCAGTGGGAAACTTGTCCTCTCTGGTTACCCTTGATCTCAGCTTCAACACTTTATCAGGAACCATTCCAGAAGAAATAGGAAAGCTTTCTAACCTGAAGTTTCTATCTTTGAATTCAAATTCCTTGCAAGGTGGGATTCCAACCACTATTGGAAACTGTTCAAAGCTTCAGCAGCTAGAACTTTTCGACAACCAGCTCTCTGGGATGATACCTGGAGAAATAGGCCAGTTGAAGGCTCTTGAAACCTTAAGAGCAGGTGGAAATCCAGGTATTCATGGGGAAATTCCAATGCAGATATCAGATTGCAAGGCTCTAGTTTTTCTTGGACTTGCAGTTACAGGGGTTTCAGGGGAGATTCCACCAAGCATAGGAGAACTTACAAATCTCAAGACACTTTCTGTCTACACAGCACACCTCAGTGGTAAAATCCCATCAGAGATTCAAAACTGCTCAAGCTTGGAAGATTTGTTTCTGTATGAAAACCAGATTTCTGGAAATATTCCTTATGAATTAGGTTCCATGCAAAGCCTCAAGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGAACCATTCCTGAAAGTCTGGGAAACTGCACAAATCTGAAGGTTATAGATTTCTCTTTGAATTCTCTGGGTGGTTTGTTACCTGTCACTCTCAGTAATCTACTTTCATTGGAGGAGTTGCTGTTGTCTGATAATAACATTTATGGAGAAATACCTTCATATGTTGGCAATTTTTCCAGGCTGAAGCAACTTGAATTGGATAACAACAAATTTTCTGGTGAGATTCCACCTGTTCTGGGGAAATTAAAGGATCTTACCCTCTTCTATGCCTGGAATAATCAGCTCAATGGAAGCATGCCAACAGAACTATCCAACTGTGAGAAACTTGAAGCTGTTGATCTTTCACACAATTTCCTCACAGGTCCAATTCCAAGCTCTCTCTTTCATCTGAAGAATTTAACTCAGTTGTTGCTGATATCAAACAGGTTTTCAGGGAAAATTCCACCAGATATTGGAAGCTGCACTAGCTTGATCAGGTTAAGACTTGGATCAAACAACTTCACCGGTCAAATTCCACCACAAATTGGCCTTTTAAGCAGTTTGACCTTTCTTGAGTTGTCAGATAATCTCCTCAGTGGAAATGTTCCCTCAGAGATAGGTAACTGTGCTCATCTAGAAATGCTTGACTTGCACAGCAATGCACTACAAGGAACCATCCCTTCCTCATTGAAGTTTCTAGTTGGTCTTAATGTGTTGGATCTTTCTGAAAACAGAATAAATGGTAGCATTCCTACGAATTTGGGCAAGCTTGCATCATTGAACAAGTTGATTCTAAGTGGAAACTTTATCAGTGGTTTGATCCCTCAGTCACTAGGCCTTTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAACAGGATCACTGGTTCAATTCCTGATGAAATTGGTCAGTTGCAAGGATTAGATATCCTCTTGAACTTGAGCTTGAATTCTCTTACTGGCCCCATTCCAGAAAGCTTCTCAAATCTCTCAAAACTTTCTACGTTGGATCTCTCTCACAATAAGCTCACAGGAACCCTTAGAATTTTGGGTGGTCTTGACAATCTTGTGTCTCTGAATGTCTCATACAACAACTTTTCTGGTTCTCTTCCTGATTCGAAGTTTTTCCGGGAACTACCTGCCGCGGCATATGCTGGTAACCCTGAGCTTTGCATTACAAAGTGTCATGCAACTGGAAATCGCCAAGGCGTGAAGTCCATAAAAAATATTATCATCTACACTTTCCTTGGGGTGATTTTAACTTCTATTTTTATCACCTTCGGAGTGATTTTCGCTCTCCGAATTCAAGAGACTAATTTTGGGGGGAACTTTGATGAAGGTGGAGACATGGAATGGGCATTCACTCCATTCCAGAAACTCAACTTCTCCATCAATGACATTGTCTCCAAGTTGTCAGATTCAAACATTGTGGGAAAAGGTGGCTCAGGAATGGTTTATCGTGTAGAGACTCCAATGAAACAGGTTATTGCAGTGAAGAAGCTATGGCCAATCAAGAATGAAGAGCAACCAGAGAGAGATCTGTTCACTGCAGAAGTTCAGACCCTTGGATCAATAAGGCATAAAAACATAGTGAGACTTTTAGGATGCTGCAACAATGGAAGAACTAGATTGCTCTTGTTTGATTATATATGCAATGGGAGTTTGTTTGGATTGCTCCATGAAAATAGATTGTTCTTGGACTGGGATGCAAGGTACAAGATCATTTTGGGAACAGCTCAAGGTTTAGAATACCTTCATCATGATTGTATCCCTCCCATTGTTCATCGCGACATTAAGGCTAACAACATCTTAGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTCGCGAAACTCATGAGCTCCTCAGAGTGTTCAGCAGCATCTCATGTGGTTGCAGGTTCTTGTGGATACATAGCTCCTGAATATGGATACAGTTTAAGAATCACAGAGAAGAGCGATGTCTACAGTTACGGTGTTGTGCTCCTTGAGGTCTTAACAGGGATGGAGCCAACTGATCACAGGATTCCAGAAGGTGCACACATTGTAACATGGGTTACCAGTGAAATCAGAGAGAAGAAAAGAGAGTTTTCATCTATCCTAGACCAGGAACTAGTTTTGCAGTGTGGAACAAGAACCCCAGAGATGCTTCAGGTTCTAGGGGTGGCTCTCCTCTGTGTGAATCCATCCCCGGAAGAACGACCCGCCATGAAAGATGTAACCGCAATGCTCAAGGAAATCAGGCATGAAAATGACGATTTTGAGAAGCCAAATTTTCTGCAAAAAGGCATGGTTACCAACCCAAAAGCAGCAGTACACTGTTCTAGTTTCTCCAGATCATGTGAACATTTAATAGAATCTTCATCTTCTTCTTCATAG 3258 0.4113 MSSNVAFTLFIFFLNISLFPALNQEGLSLLSWLSTFNSTTNSSSTFSSWNPTHKNPCRWDYVKCSAEGFVEEIIITSIDLRSGFPTQLLSFGNLTILVISNGNLTGEIPSSVGNLSSLVTLDLSFNTLSGTIPEEIGKLSNLKFLSLNSNSLQGGIPTTIGNCSKLQQLELFDNQLSGMIPGEIGQLKALETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGEIPPSIGELTNLKTLSVYTAHLSGKIPSEIQNCSSLEDLFLYENQISGNIPYELGSMQSLKRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLGGLLPVTLSNLLSLEELLLSDNNIYGEIPSYVGNFSRLKQLELDNNKFSGEIPPVLGKLKDLTLFYAWNNQLNGSMPTELSNCEKLEAVDLSHNFLTGPIPSSLFHLKNLTQLLLISNRFSGKIPPDIGSCTSLIRLRLGSNNFTGQIPPQIGLLSSLTFLELSDNLLSGNVPSEIGNCAHLEMLDLHSNALQGTIPSSLKFLVGLNVLDLSENRINGSIPTNLGKLASLNKLILSGNFISGLIPQSLGLCKDLQLLDISNNRITGSIPDEIGQLQGLDILLNLSLNSLTGPIPESFSNLSKLSTLDLSHNKLTGTLRILGGLDNLVSLNVSYNNFSGSLPDSKFFRELPAAAYAGNPELCITKCHATGNRQGVKSIKNIIIYTFLGVILTSIFITFGVIFALRIQETNFGGNFDEGGDMEWAFTPFQKLNFSINDIVSKLSDSNIVGKGGSGMVYRVETPMKQVIAVKKLWPIKNEEQPERDLFTAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYICNGSLFGLLHENRLFLDWDARYKIILGTAQGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLMSSSECSAASHVVAGSCGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDHRIPEGAHIVTWVTSEIREKKREFSSILDQELVLQCGTRTPEMLQVLGVALLCVNPSPEERPAMKDVTAMLKEIRHENDDFEKPNFLQKGMVTNPKAAVHCSSFSRSCEHLIESSSSSS* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4904 1085 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Lja1g4904 1085 Pfam Leucine rich repeat 502 559 IPR001611 GO:0005515
Lja1g4904 1085 Pfam Leucine rich repeat 603 657 IPR001611 GO:0005515
Lja1g4904 1085 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Lja1g4904 1085 Gene3D Ribonuclease Inhibitor 21 202 IPR032675 -
Lja1g4904 1085 SUPERFAMILY RNI-like 326 662 - -
Lja1g4904 1085 ProSiteProfiles Protein kinase domain profile. 762 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4904 1085 SMART serkin_6 762 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4904 1085 Gene3D Ribonuclease Inhibitor 378 691 IPR032675 -
Lja1g4904 1085 Gene3D Ribonuclease Inhibitor 215 377 IPR032675 -
Lja1g4904 1085 Gene3D Phosphorylase Kinase; domain 1 740 840 - -
Lja1g4904 1085 Pfam Leucine rich repeat N-terminal domain 23 65 IPR013210 -
Lja1g4904 1085 PRINTS Leucine-rich repeat signature 118 131 - -
Lja1g4904 1085 PRINTS Leucine-rich repeat signature 621 634 - -
Lja1g4904 1085 ProSitePatterns Protein kinases ATP-binding region signature. 768 796 IPR017441 GO:0005524
Lja1g4904 1085 SUPERFAMILY RNI-like 83 394 - -
Lja1g4904 1085 Pfam Protein kinase domain 765 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4904 1085 SUPERFAMILY Protein kinase-like (PK-like) 747 1046 IPR011009 -
Lja1g4904 1085 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1058 - -
Lja1g4904 1085 SMART LRR_typ_2 524 547 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 115 138 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 139 163 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 284 308 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 644 677 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 621 643 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 476 500 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 428 452 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 332 356 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 572 596 IPR003591 -
Lja1g4904 1085 SMART LRR_typ_2 548 571 IPR003591 -
Lja1g4904 1085 SMART LRR_sd22_2 332 358 - -
Lja1g4904 1085 SMART LRR_sd22_2 621 646 - -
Lja1g4904 1085 SMART LRR_sd22_2 572 593 - -
Lja1g4904 1085 SMART LRR_sd22_2 115 138 - -
Lja1g4904 1085 SMART LRR_sd22_2 139 165 - -
Lja1g4904 1085 SMART LRR_sd22_2 476 502 - -
Lja1g4904 1085 SMART LRR_sd22_2 524 547 - -
Lja1g4904 1085 PANTHER LRR RECEPTOR-LIKE KINASE 5 1058 - -
Lja1g4904 1085 Gene3D Transferase(Phosphotransferase) domain 1 841 1059 - -
Lja1g4904 1085 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Lja1g4904 1085 ProSiteProfiles Leucine-rich repeat profile. 574 596 IPR001611 GO:0005515
Lja1g4904 1085 Pfam Leucine Rich Repeat 406 428 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4904 Lja-Chr1 67507857 67511906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4904 21 1075 Receptor kinase-like Gene Family AT5G56040 46.771 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g4904 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4904 - - gmx:100807225 1782.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4904 1 67507857 67511906 Lja1g4904 1 67507857 67511906 ECH