Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4903 ATGTTCCAACAAAAACATCATACTAACGGGCTAGACCAAATGTTTCTTCATCAGTTCCCATCTTCTTGTTCTTCTATGCAACTCCCAACCTCAATGGAGCGGTCAAGTTCATCAAGGTGGAAGCCCCACATCGAGGTTGCTCCCAATTGCCCTCGCTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCCCAGCCGCGGTACTTCTGCAAAGGCTGCCGCCGCTACTGGACCAAAGGCGGCTCTCTCCGCAACGTCCCTGTAGGGGGCGGATGCAGAAAGAGCCGCCGCGTGAGGTCCTCCGCGTCAAGGCACCTTCAAAGCGAACGCCTTTCTTCATCAATTGGTGGTAGTGGTGATGGTGATCAACACGGAGGCCAAACCAATGGGTCACGTGACATTGACATGGCGCTCGTGTTCGCGAAATTCTTGAACCAAGACACGAGCTCTGGTGAGGAATTTGATAGAGAGGGTAACAACCGGTCGTCGTCTTTGACACCGGAAAGTGTGGAGCTGCCTCAGAAGCAGCTCTCTGATGCTGAAGCTGATTCTGATGCTGATGCGATGATGGTAGTGGGTGGTGGGGACCACCTTCTTGTTGGTGATGAGTTGAGTTTGAGTGGGATTGATGAGTTGGAGGGTTTTCTTGGTGGTGACGATAATGATGTGGTCCATGATGCTTTGTTTTCTGATACTACCTTGTCTGCTTCCTCCATTACCTGGCAGACACCGATGATCGAAAAGCAGTCGTTGGAGTTGGAGTTGGAGTACTCTATGCCATTCAATGAGGATTGTATTGGAAGTCATGATCAATTGTTACCGGTTAGTTCAGCTTCTAGTACAATGAATTTAATTAGCGACAGTTGGGCTACTTGGAATTCCTTTGATCTTTCAACCATGGAAGTTTTCTCATCAAGACCTTGA 939 0.4888 MFQQKHHTNGLDQMFLHQFPSSCSSMQLPTSMERSSSSRWKPHIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRVRSSASRHLQSERLSSSIGGSGDGDQHGGQTNGSRDIDMALVFAKFLNQDTSSGEEFDREGNNRSSSLTPESVELPQKQLSDAEADSDADAMMVVGGGDHLLVGDELSLSGIDELEGFLGGDDNDVVHDALFSDTTLSASSITWQTPMIEKQSLELELEYSMPFNEDCIGSHDQLLPVSSASSTMNLISDSWATWNSFDLSTMEVFSSRP* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4903 312 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Lja1g4903 312 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Lja1g4903 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 23 279 - -
Lja1g4903 312 MobiDBLite consensus disorder prediction 93 136 - -
Lja1g4903 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 279 IPR045174 GO:0003700|GO:0006355
Lja1g4903 312 MobiDBLite consensus disorder prediction 110 135 - -
Lja1g4903 312 MobiDBLite consensus disorder prediction 154 189 - -
Lja1g4903 312 Pfam Dof domain, zinc finger 48 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4903 Lja-Chr1 67491914 67492852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4903 32 150 C2C2-Dof Transcription Factor Family AT3G52440 58.268 2.03e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g4903 zf-Dof 8.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4903 - - mtr:MTR_3g090430 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4903 1 67491914 67492852 Lja1g4903 1 67491914 67492852 ECH