Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4893 ATGGGCAAGAACAAGAAGCTAGCACTCTTGTTCCTTTCTATAGCTGCCATCGTTATGGAAGAAGCAATGTTCCACACTGTTGGAGCTGAACCAGTGGAAGATAAACAAGGTTTGCTTGATTTCCTTCACAGCATGAACCACCCTCCACACATAAACTGGGATGAGAACTCTTCTGTTTGCCAAACCTGGAAAGGAGTGATCTGCAACACTGACCAATCCAGAGTCATAGCTCTTCATTTACCTGGAGCTGGATTAAGTGGTCCAATTCTACCCAACACTCTTAGTCTCCTCACAGCACTTGAAATTGTGAGTCTCAGATCAAATGGGATAACAGGCCCTTTCCCTGATGGTTTCTCTGAGCTAAAAAACTTGTCTGGTCTCTATCTCCAATCCAACAAGCTTTCTGGCCATTTGCCATTGGATTTCTCTGTTTGGAAAAATCTTACTTTCATCAATTTATCCAACAATTCTTTCAATGGGAGCATCCCAATTTCAATTTCAAATCTGACCCATCTGAATTCTTTAGTCCTTGCCAACAACTCACTTTCTGGTGAGATTCCTGATCTCAATGTTCCCACCACCCTGCAAGAGCTGAATTTAGAAAACAATAACCTTACTGGGGTTGTGCCTAAATCACTTCTTAGATTCCCAAGTTCAACTTTTTCTGGTAATAATCTTACATCATCAGAAAATGCACTTCCTCCAGAAGCACCTAATGCAGATGTAAAGAAGAAAAGCAAAGGACTCAGTGAACCTGCACTGTTGGGGATCATCATTGGTGCTTGTGTTCTGGGATTTGTGGTGATTGCAAGTGTTATGATTGTGTGTTGCTATGACCATGCTGATGTATATGGCGAACCGGCGAAGCAACATAAAAAGGAAGCTTCTGGGAAAGCAAAATCTTCTGAAAGTCAAGACAAGAACAAAATTGTGTTCTTTGAAGGTTGCAATTTTGCATTTGATTTGGAGGATCTTCTGAGGGCCTCTGCTGAGATTCTTGGAAAGGGTAGCTTCAGCACGACGTATAAGGCGGCTCTGGAGGATGCAGCCACCGTGGCGGTGAAGAGGTTGAAGGAGGTCACTGCTGGGAAAAGAGAGTTTGAACAGCAGATGGAGGTGGTGGGGAGAATTAAGCACGAGAACGTGGATGCTTTGAGTGCATATTACTACTCTAAGGAGGAGAAACTTGTAGTATCTGAGTACCATCAACAAGGAAGCGTTTCTGCTATGTTACATGGCAAAAATGGCGAGGGGAGGATTTCTTTAGATTGGGACACCCGTTTGAGAATAGCAATTGGTGCAGCAAGAGGCATTGGTTACATCCATGCCCAACAAGGAGGGAAACTCGTCCATGGAAACATTAAAGCCTCAAACACATTCCTCAACTCACAAGGATACGGTTCTGTATCTGACACAGCCTTAGCAACACTGATGAGTCCATTACCCTCACCACCAGGCACGCGAACAGCAGGGTACCGTGCACCGGAAGTAACTGACACGCGCAAAGCAACACAAGCATCCGATGTGTACAGTTTCGGGGTCCTTCTACTCGAGCTTTTAACTGGGAAATCACCAACATATTCAGCAGAAGGCGAGCAAGTTGTGAACTTGGTGAGGTGGGTGAATTCTGTGGTGAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTGGAGCTGTTGAGGTTTCCAAATATTGAGGAAGAGATGGTGGAGATGCTGCAGATTGGGATGGCTTGTGCTGCAAGAATGCCAGATCAGAGGCCGAAAATGAATGATGTGGTGAGAATGATTGAGGGGATTCGGAGGGGAAATACTGGAAATCAAGCTTCGCCCACTGAGTCTAGATCAGAAGCCTCTACACCAACAGTATATGCAACTTGA 1878 0.4483 MGKNKKLALLFLSIAAIVMEEAMFHTVGAEPVEDKQGLLDFLHSMNHPPHINWDENSSVCQTWKGVICNTDQSRVIALHLPGAGLSGPILPNTLSLLTALEIVSLRSNGITGPFPDGFSELKNLSGLYLQSNKLSGHLPLDFSVWKNLTFINLSNNSFNGSIPISISNLTHLNSLVLANNSLSGEIPDLNVPTTLQELNLENNNLTGVVPKSLLRFPSSTFSGNNLTSSENALPPEAPNADVKKKSKGLSEPALLGIIIGACVLGFVVIASVMIVCCYDHADVYGEPAKQHKKEASGKAKSSESQDKNKIVFFEGCNFAFDLEDLLRASAEILGKGSFSTTYKAALEDAATVAVKRLKEVTAGKREFEQQMEVVGRIKHENVDALSAYYYSKEEKLVVSEYHQQGSVSAMLHGKNGEGRISLDWDTRLRIAIGAARGIGYIHAQQGGKLVHGNIKASNTFLNSQGYGSVSDTALATLMSPLPSPPGTRTAGYRAPEVTDTRKATQASDVYSFGVLLLELLTGKSPTYSAEGEQVVNLVRWVNSVVREEWTAEVFDVELLRFPNIEEEMVEMLQIGMACAARMPDQRPKMNDVVRMIEGIRRGNTGNQASPTESRSEASTPTVYAT* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4893 625 Gene3D Phosphorylase Kinase; domain 1 292 401 - -
Lja1g4893 625 MobiDBLite consensus disorder prediction 602 625 - -
Lja1g4893 625 PANTHER OS05G0588300 PROTEIN 18 624 - -
Lja1g4893 625 MobiDBLite consensus disorder prediction 600 625 - -
Lja1g4893 625 SUPERFAMILY Protein kinase-like (PK-like) 331 597 IPR011009 -
Lja1g4893 625 ProSitePatterns Protein kinases ATP-binding region signature. 333 364 IPR017441 GO:0005524
Lja1g4893 625 Gene3D Ribonuclease Inhibitor 32 242 IPR032675 -
Lja1g4893 625 SUPERFAMILY L domain-like 47 219 - -
Lja1g4893 625 PANTHER LRR RECEPTOR-LIKE KINASE 18 624 - -
Lja1g4893 625 ProSiteProfiles Leucine-rich repeat profile. 194 215 IPR001611 GO:0005515
Lja1g4893 625 Gene3D Transferase(Phosphotransferase) domain 1 403 619 - -
Lja1g4893 625 Pfam Protein tyrosine and serine/threonine kinase 331 595 IPR001245 GO:0004672|GO:0006468
Lja1g4893 625 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Lja1g4893 625 ProSiteProfiles Protein kinase domain profile. 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4893 625 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Lja1g4893 625 MobiDBLite consensus disorder prediction 225 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4893 Lja-Chr1 67174718 67177449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4893 23 621 Receptor kinase-like Gene Family AT4G23740 55.645 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g4893 PK_Tyr_Ser-Thr 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4893 - - gmx:100813065 900.968