Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4890 ATGATGGAAATGGAAATGGAACAGAGTTTCCTATGCAAATACACAGAGCACCACAGCATCACCAAGAAGCTTGTGAAGGGAAAAACCATGGAGCCCAGAGTGGTGAGCATATCTGTCACCGACCCAGACGCCACCGACTCCTCCAGCGACGAAGAAGGAGGAGGAAGCAGAGGAGAGAGGTTCTTCCGCCGGAGAACAAAGCGCTATGTCAACAGGATCGAGATTGAAACCACCGCCACCGTTTCAAACCCACGGAAAAGGCCAGCCGTGAAAACACCGTCATCCCACCGGCGGCCGGCGAAGGTTCCGGCGGTTAACGGCGATGGGAGGAAGTTCCGCGGTGTCCGGCAGCGGCCGTGGGGGAAATGGGCAGCGGAGATTCGAGATCCGGCGAAGAGAGTCCGCCTTTGGCTTGGCACCTACAACACGGCGGAGGAGGCCGCCATGGTGTACGACAATGCCGCGATTCGACTCCGTGGACCTGACGCGCTGACGAACTTCGTCACGCCGCCGCAGAAGGAAAATGAAGATGCTCCGCCGCTTCCGGTGGCTGTGAAACCTGAAATGAAGGTCACCGTCGACGCAGAAGCCTCGTCGAGTTACGACTCCGGCGACGACCACCGGTGTCGCAACCTCTCGTCTCCAACCTCAGTCCTCCATTTCAGAACCAACTCGACCGAGTCACAAAAACCGGTCGAACCAGAAGATACAACAACCGAACCGGAATCAGCTTCATTTTCTGGTTCAGGGGTTTTGTTCAGTGAGTACCAAAGCCAAAGCCAAGGTGAAACGACATCATTGTTTGATGAAACGACAATGGATGTCACGATTCCTTCATGGGATGATGTTTTCAACTACCAAGCCACTGATTACCCTCTTCTCTTTGAAGAAGAACCAGCACAGATTTTCAGTGACACGACGCCGTTTGGTGGTTTAGATGAAGATTTCTGCAGTGATAGCATTTTCCTTGCTGATTCTCTCATAGACTTTGATATAGCATGCCCTCCTCCTCCCTCCAACTCATGCCAGGCGGATGATGATTTCTTTCAAGACATTTGTTTCGGCTCCGATCCTCTGGTCGCACTCTGA 1089 0.5326 MMEMEMEQSFLCKYTEHHSITKKLVKGKTMEPRVVSISVTDPDATDSSSDEEGGGSRGERFFRRRTKRYVNRIEIETTATVSNPRKRPAVKTPSSHRRPAKVPAVNGDGRKFRGVRQRPWGKWAAEIRDPAKRVRLWLGTYNTAEEAAMVYDNAAIRLRGPDALTNFVTPPQKENEDAPPLPVAVKPEMKVTVDAEASSSYDSGDDHRCRNLSSPTSVLHFRTNSTESQKPVEPEDTTTEPESASFSGSGVLFSEYQSQSQGETTSLFDETTMDVTIPSWDDVFNYQATDYPLLFEEEPAQIFSDTTPFGGLDEDFCSDSIFLADSLIDFDIACPPPPSNSCQADDDFFQDICFGSDPLVAL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4890 362 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Lja1g4890 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 11 355 - -
Lja1g4890 362 MobiDBLite consensus disorder prediction 80 113 - -
Lja1g4890 362 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
Lja1g4890 362 MobiDBLite consensus disorder prediction 210 248 - -
Lja1g4890 362 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 355 - -
Lja1g4890 362 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Lja1g4890 362 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Lja1g4890 362 MobiDBLite consensus disorder prediction 198 248 - -
Lja1g4890 362 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Lja1g4890 362 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Lja1g4890 362 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Lja1g4890 362 SUPERFAMILY DNA-binding domain 111 168 IPR016177 GO:0003677
Lja1g4890 362 MobiDBLite consensus disorder prediction 36 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4890 Lja-Chr1 67103483 67105303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4890 12 246 AP2-EREBP Transcription Factor Family AT4G27950 45.455 5.64e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g4890 AP2 6.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4890 - - adu:107460630 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4890 1 67103483 67105303 Lja1g4890 1 67103483 67105303 ECH