Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4886 ATGGATGACAGTTTATCTGATATTTTTGAGGACACTGAATTTGGGAACAACCAGTTTGGTTCAGATGATCTCTTTGCCATTTTGGAGAGCCTTGAAGGGTTCTCCACCGATTTTCCTCTCGTTAACGAAGCTGTTGCGGTCTCGAATTCCAAAGAGAATACTGAGGAGAGTCCCAGGTTGGTGTCCCAGAAATCAACCTCTTCAAGTGCTTTGCATGATTCAGAAACTGAGCTTGAAACCTCGCCGAAAAGCAATAAGAGACAGAAGGTTAGTCCCACATCGGCGGAGGAGGCGAACCCTGATGGAACACCAAGGATGTCTCACATTACCGTGGAGCGGAACAGGAGAAAGCAAATGAATGAGCACTTGACTGTCTTGAGGTCACTCATGCCTTGCTTCTATGTTAAAAGGGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAGTGAGTTGCAGCAGTTGCTCCAAGCTCTGGAGGCCAAGAAACAAAGAAAAGTCTACAGTGAAGTCCTGAGCCCAAGGCTGGTTTCAAGCCCAAGGCCCTCACCACTGAGCCCACGGAAACAACCACTGAGCCCAAGGCTAAACCTGCCCATAAGCCCAAGAACTCCACAACCAGGAAGCCCATACAAGCCTAGGTTGCCGCAGCAGCAGCTAAACTACATTAACATTCCACCACCAGTGGCGTTCTCAAACTCTCTCGAGCCGTCTCCCACTTCCTCCGCCGCTTCCTCCATCAACGACAACATCAATGAGCTTGTGGCCAATTCCACCTCCGCCGTGGCTGACGTCGAGGTCAAGTTTTCGGGTCCGCATCTGCTTTTGAAAACGGTGTCTCAGCGGATTCCGGGGCAGGCTATGAAGATTATTTCAACTCTTGAAGATCTTGCGCTAGAAATCCTCCATGTTAACATTAGTTCTAGTACTGCGGATGATACCATGCTGAACTCGTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCTGAAGAACTGGCTCAACAAATCCAGCAAACATTCTGCTAA 1038 0.4827 MDDSLSDIFEDTEFGNNQFGSDDLFAILESLEGFSTDFPLVNEAVAVSNSKENTEESPRLVSQKSTSSSALHDSETELETSPKSNKRQKVSPTSAEEANPDGTPRMSHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQQLLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKQPLSPRLNLPISPRTPQPGSPYKPRLPQQQLNYINIPPPVAFSNSLEPSPTSSAASSINDNINELVANSTSAVADVEVKFSGPHLLLKTVSQRIPGQAMKIISTLEDLALEILHVNISSSTADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4886 345 Pfam Helix-loop-helix DNA-binding domain 105 155 IPR011598 GO:0046983
Lja1g4886 345 CDD bHLH_AtFAMA_like 106 177 - -
Lja1g4886 345 MobiDBLite consensus disorder prediction 85 100 - -
Lja1g4886 345 Coils Coil 147 167 - -
Lja1g4886 345 MobiDBLite consensus disorder prediction 49 108 - -
Lja1g4886 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 154 IPR011598 GO:0046983
Lja1g4886 345 Gene3D - 95 168 IPR036638 GO:0046983
Lja1g4886 345 PANTHER - 1 345 - -
Lja1g4886 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 177 IPR036638 GO:0046983
Lja1g4886 345 SMART finulus 109 160 IPR011598 GO:0046983
Lja1g4886 345 MobiDBLite consensus disorder prediction 200 214 - -
Lja1g4886 345 MobiDBLite consensus disorder prediction 49 75 - -
Lja1g4886 345 PANTHER TRANSCRIPTION FACTOR FAMA 1 345 IPR044283 GO:0003700|GO:0010052
Lja1g4886 345 MobiDBLite consensus disorder prediction 175 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4886 Lja-Chr1 66899493 66901760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4886 1 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.422 8.82e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g4886 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4886 K20558 - gmx:100777437 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4886 1 66899493 66901760 Lja1g4886 1 66899493 66901760 ECH