Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4877 ATGAAATATATGCTTATCTTTCTTGTCACTTTCAAGATTGTGAAGAAGAAGCTGGCGAAGCTACAAGAGGCTATGGGGTTTCAAGTTCAACAAACATCACATAGCACTAAACGGAAATCACATCCTGCTTCCAAAGCAAATGAGGACTCTAACGATGCTCATGATCAAAGCTCTTTAATTTCAGGGGCACTGAACTTAACTAATCATATTCTAACCAATACCAAATTAGTTCCCCCAGGATATGATTCATGGGTGGCATGGCACCCATCTGCACTGAACTCGTTTGATAGAATGATGAAAGCTGCCGCTGGGAAGAGGATCGTGGTTTTTTTAGACTATGATGGCACCTTATCACCGATCGTAAATGACCCGGATCGTGCTTTCATGTCGCATGAGATGCGTGCAGCAGTATCTGAAGTTGCTAATTATTTTCCAACAGCAATAATTAGTGGAAGAAGTAGAGATAAGGTGAAAGATTTTGTGAAGTTAGATAATTTATACTATGCTGGGAGCCATGGCATGGACATAATGGGACCACCAATGCCAGATAGATCTTCTTCTGATGGCAAGCATTGTGAAATTGAGCCTTACACAAATGGCAATGGAGTTCCATTTCAACCTGCCAAGAAGTATTTGCCTGCACTTCTAGAGATATTAAGAAGATTAGAGGATGGAGTGAAGGAGATTCAAGGTGCAATGGTAGAGGATAACAGATTCTGCATCTCTGTTCATTTCAGGCAGGTTCAGGAAAAGGATTATCCTATTTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAAGTATCCACAGTTTTGCTTAACTGAGGGTAAAAAGGTTCTGGAAATAAGGCCATCTATAGAATGGAACAAAGGTAATGCTGTTGAATATTTTCTTGACACACTGGGATTAAGCAGTTCCAGCAATATACTTCCTGTGTATATCGGCGATGATAAAACCGATGAGGATGCTTTTAAGGCCATACAGAGCAGAGGTCAAGGTTATCCAATTGTAGTGACCTCAATTCCAAGAGAAACAAATGCTTTGTACTCTCTGTGTGACCCGTCGGAAGTGTTAATCTTCCTGTCCCGGCTGGCAAAATGGATGAAAACCTCTTACTCAAGCAGGGCCTTAAACGTTGGTTGA 1140 0.4114 MKYMLIFLVTFKIVKKKLAKLQEAMGFQVQQTSHSTKRKSHPASKANEDSNDAHDQSSLISGALNLTNHILTNTKLVPPGYDSWVAWHPSALNSFDRMMKAAAGKRIVVFLDYDGTLSPIVNDPDRAFMSHEMRAAVSEVANYFPTAIISGRSRDKVKDFVKLDNLYYAGSHGMDIMGPPMPDRSSSDGKHCEIEPYTNGNGVPFQPAKKYLPALLEILRRLEDGVKEIQGAMVEDNRFCISVHFRQVQEKDYPILEEKVKSVLEKYPQFCLTEGKKVLEIRPSIEWNKGNAVEYFLDTLGLSSSSNILPVYIGDDKTDEDAFKAIQSRGQGYPIVVTSIPRETNALYSLCDPSEVLIFLSRLAKWMKTSYSSRALNVG* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4877 379 CDD HAD_TPP 108 356 - -
Lja1g4877 379 SUPERFAMILY HAD-like 108 368 IPR036412 -
Lja1g4877 379 MobiDBLite consensus disorder prediction 29 55 - -
Lja1g4877 379 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 32 375 IPR044651 GO:0004805|GO:0005992
Lja1g4877 379 TIGRFAM T6PP: trehalose-phosphatase 104 365 IPR003337 GO:0003824|GO:0005992
Lja1g4877 379 Pfam Trehalose-phosphatase 110 353 IPR003337 GO:0003824|GO:0005992
Lja1g4877 379 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 32 375 - -
Lja1g4877 379 Gene3D - 107 185 IPR023214 -
Lja1g4877 379 Gene3D - 207 375 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4877 Lja-Chr1 66668963 66672061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4877 105 364 Trehalose Biosynthesis Gene Families AT1G70290 25.540 2.54e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4877 K01087 - gmx:100819120 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4877 1 66668963 66672061 Lja1g4877 1 66668963 66672061 ECH