Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4875 ATGATGGATTGCAACAAAGGTGAGGCAGTTAGAGCCAAAGAAATAGCTGAGAGGAAATTTTCAGAAAGGGAATATATTGGTGCAAAGAAGTTTGCTCTCAAGGCTCAAAATCTGTATCCTGATTTGGAGGATCTTTCCCAGTTTTTGACCACTCTTGATATTCATATCTCTGCTGAGAACAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTAAGTCCCTTTGCTGATGAGGAGACTGTTAGAAAGCAGTACAGGAAGCTGGCTCTCACCCTTCACCCTGACAAAAACAAGTGTTTAGGTGCAGAGGGTGCATTTAAGCTTGTTTCAGAGGCATGGAGTTTGCTATCAGACAAGACCAAGAGACTAGAATATAACCAGAAAAGGAGTTCGAAAGGTTTCCAACATAGTACTCCCAGCCACCGGTCTCAATCAGATGTGCCCTCTTCAAATGGTTTTTATAAGAAGAATGTAACTTCAAATGTGAGGGCTGGAAACAGTAATGCTCGGGCATCTTCAATTCCTCCTCCACATAAAAAAGCTGAAACCTTTTGGACCATCTGTAATCGGTGCAAGACTCATTATGAATATCTCAGGGTTTATTTGAATCATACCCTTTTATGTCCCAACTGTAATGAAGCTTTTGTGGCCGTAGAGAGGGGCCCACCTCCCAATGTTTTTAAGCCATCAAATTGGTCTTCCCATCAAAAGCATCAGAGTTCTCAACATCAAGCATCAGATGTCTTTCAGTGGGGTTCTCACTCCAGAATGTCTAGTTTTGGTAGCAAAGATGGATCATCATCTGCTGCTGCTCAAGCTGCAAGTGTTGTGCTGCAGGCAAGTGAGAAAGTGAGGAGGGAGGGAGCAGTATCCATTGCTGAATGGGAGAGGAGTCAAATGTCTAAAAGGACTAATGGTGTGAAAAGAAGGAAGACTGATGATATTCGCATTAATGGTTATCAAGGGTATATGGCTAACCATACAACTGTGCGACATGGAGCGACAGGTATGGGCAGTTTTTCTGAATCAGGAAAAGCTACCTCTGAAGCAGAAAGGAGTTATGGTTTTTCAGGTCATACTGGCAAGCATTACAGCACGAGAGAGTTGTCAATGTTTGAATTACGGAACATGTTGATGAATAAGTCACGGATGGAAATTCGCAAGAAACTTCAAGAATGGAGATCAATGGCTGAAGCTAAGATTACCAACAAGGACAGAGAGAACAAGAGACAGAAAAGCGCATTTAATGGTAAAACAACTGGTTCAGAGAAGAATAATGGTAACCGTCATTTGGACGTTGGTTCTTTCCCTGTTACATCTAATGATACAGTTAAGAATGTCCCCCCAACATATGTTACAATCAACGTTCCGGACCCCGATTTTCACAATTTTGATTTGGATAGAACTGAAATTGCCTTTGCAGAGGACCAGGTCTGGGCTGCTTATGATGATGATGATGGAATGCCTCGATATTATGCTCGAGTTCACAAGGTGATCTCTGTAAAGCCATTTAGAATGCGGATCAGTTGGCTTAACTCCCGAAGCAACAGTGAATTGGGCCCCATAGATTGGGTTGGTTCTGGTTTTTATAAAACTTGTGGGGATTTCAGGACTGGCAAGCATGAAGTATCTGAATCGCTAAATTCATTTTCCCACAAGGTTAGGTGGACAAAAGGCACCAGAGGAGTTGTTCGTATCTTCCCCGGAAAGGGGGAAGTCTGGGCTCTTTACAGAAACTGGTCTCCTGATTGGAATGAACGTACTCCAGATGAAGTGATACACAAGTATGACATGGTGGAGGTGCTTGAAGATTTTGATGAAGAGCAAGGTATATTAGTTACTCCTCTTATTAAAGTTGCAGGCTTTAGAACAGTGTTTCAGAGGCACATGGACCATGACCAGCATAGGAGGATTCCTAAAGGGGAGATGTTCCGATTCTCTCATCAGGTTCCTAATTGCTTGCTTACTGGCCATGAAGCTCATAATGCTCCAAAGGGTTGTCGAGAGTTGGATCCAGCAGCTACTCCTTTAGAGCTCCTTCAGATAGTAACAGGAGCTAATGAAGACGCGTAG 2079 0.4286 MMDCNKGEAVRAKEIAERKFSEREYIGAKKFALKAQNLYPDLEDLSQFLTTLDIHISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKCLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSSKGFQHSTPSHRSQSDVPSSNGFYKKNVTSNVRAGNSNARASSIPPPHKKAETFWTICNRCKTHYEYLRVYLNHTLLCPNCNEAFVAVERGPPPNVFKPSNWSSHQKHQSSQHQASDVFQWGSHSRMSSFGSKDGSSSAAAQAASVVLQASEKVRREGAVSIAEWERSQMSKRTNGVKRRKTDDIRINGYQGYMANHTTVRHGATGMGSFSESGKATSEAERSYGFSGHTGKHYSTRELSMFELRNMLMNKSRMEIRKKLQEWRSMAEAKITNKDRENKRQKSAFNGKTTGSEKNNGNRHLDVGSFPVTSNDTVKNVPPTYVTINVPDPDFHNFDLDRTEIAFAEDQVWAAYDDDDGMPRYYARVHKVISVKPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEVSESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNERTPDEVIHKYDMVEVLEDFDEEQGILVTPLIKVAGFRTVFQRHMDHDQHRRIPKGEMFRFSHQVPNCLLTGHEAHNAPKGCRELDPAATPLELLQIVTGANEDA* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4875 692 MobiDBLite consensus disorder prediction 132 175 - -
Lja1g4875 692 Pfam Domain of unknown function (DUF3444) 455 661 IPR024593 -
Lja1g4875 692 SUPERFAMILY Chaperone J-domain 59 127 IPR036869 -
Lja1g4875 692 CDD DnaJ 67 120 IPR001623 -
Lja1g4875 692 MobiDBLite consensus disorder prediction 416 441 - -
Lja1g4875 692 PRINTS DnaJ domain signature 69 87 IPR001623 -
Lja1g4875 692 PRINTS DnaJ domain signature 87 102 IPR001623 -
Lja1g4875 692 PRINTS DnaJ domain signature 103 123 IPR001623 -
Lja1g4875 692 MobiDBLite consensus disorder prediction 229 249 - -
Lja1g4875 692 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Lja1g4875 692 PANTHER HEAT SHOCK PROTEIN-LIKE 2 689 - -
Lja1g4875 692 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Lja1g4875 692 MobiDBLite consensus disorder prediction 129 179 - -
Lja1g4875 692 SMART dnaj_3 66 123 IPR001623 -
Lja1g4875 692 MobiDBLite consensus disorder prediction 228 249 - -
Lja1g4875 692 Pfam DnaJ domain 67 128 IPR001623 -
Lja1g4875 692 PANTHER BNAC03G44070D PROTEIN 2 689 - -
Lja1g4875 692 Gene3D DnaJ domain 64 173 IPR036869 -
Lja1g4875 692 MobiDBLite consensus disorder prediction 406 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4875 Lja-Chr1 66626190 66628268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4875 5 225 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.188 1.74e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4875 - - gmx:100814722 1110.13