Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4873 ATGGTGGTATGCGGGAGGTGCGTGAGGTCCATTTTTGCTCAGGCTGCGATCTTCACCACCAAGCTCACCGGCGTTCCGTTCGTTTCTGCTCGCTTTTCGAATCGTGGATTTAAGATCATCGCAAGGTTAGGGATGATGGTTGATACGGGTTCCATTTCAAGGGCTGGACCTCTGGTAGATATGGTTCCCCAAAAAGATGATGCTGCTTCTGCTTCTGCTGGTGGTGGTGGTGGTGGTAGTAGCAGCGGCGGGTTTGCCACCGGAGGGTGGAAGAGCGAAGATAAAAGACTTAGCTGTGGGTACTCAAGCTTTAGGGGGAAAAGAGTAACCATGGAGGATTTCTATGATATTAAGACATCAAACATAGATGGTCATTCAGTATGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCTGAGTATTTGAAGGAGCATCTATTTGATAATCTCATGAAGCATCCAAAGTTTTTGACGGATACCAAGTTGGCTATAAATGAAACATATGAGAAGACTGATGCTGACTTTCTCAATTCTGAAAAAGATACCTTTCGGGATGATGGTTCTACTGCTTCAACAGCAGTTTTGGTTGATAACCATCTTTACGTTGCCAATGTTGGAGATTCTAGAACTGTAATATCAAAATCTGGAAAAGCAATTGCTCTCTCTGAGGATCATAAGCCTAATAGAAGTGACGAGCGGAAGAGGATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGAGTTGGTGGGGTGCTAGCAATGTCCCGTGCCTTTGGCAATCGAATGCTGAAGCCTTTCGTTGTAGCAGAACCTGAGATCCAGGACCAAGACATAGATCAAGAAACTGAGCTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACCAAATGAGGATGCTGTTTCTCTTGCCCGCAATGAAGAGGAGGCCGAAGCAGCAGCTCGTAAGTTAACAGAAAGCGCTTTTACTCGTGGTAGTGCAGATAACATTACTTGTATTGTGGTGCGCTTCCACCATGAAAAAGCACACTTAGCTGAACCTGACAACGCTGGTCCAGCTAGCAGTCATCATGAATAG 1098 0.4581 MVVCGRCVRSIFAQAAIFTTKLTGVPFVSARFSNRGFKIIARLGMMVDTGSISRAGPLVDMVPQKDDAASASAGGGGGGSSSGGFATGGWKSEDKRLSCGYSSFRGKRVTMEDFYDIKTSNIDGHSVCLFGIFDGHGGSRAAEYLKEHLFDNLMKHPKFLTDTKLAINETYEKTDADFLNSEKDTFRDDGSTASTAVLVDNHLYVANVGDSRTVISKSGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQDIDQETELLVLASDGLWDVVPNEDAVSLARNEEEAEAAARKLTESAFTRGSADNITCIVVRFHHEKAHLAEPDNAGPASSHHE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4873 365 Pfam Protein phosphatase 2C 100 337 IPR001932 -
Lja1g4873 365 MobiDBLite consensus disorder prediction 67 90 - -
Lja1g4873 365 Gene3D - 89 351 IPR036457 -
Lja1g4873 365 SMART PP2C_SIG_2 94 344 IPR001932 -
Lja1g4873 365 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 80 352 - -
Lja1g4873 365 ProSiteProfiles PPM-type phosphatase domain profile. 98 344 IPR001932 -
Lja1g4873 365 PANTHER ALPHABET, ISOFORM E-RELATED 80 352 - -
Lja1g4873 365 SUPERFAMILY PP2C-like 93 345 IPR036457 -
Lja1g4873 365 SMART PP2C_4 88 342 IPR001932 -
Lja1g4873 365 CDD PP2Cc 98 344 IPR001932 -
Lja1g4873 365 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4873 Lja-Chr1 66608955 66615529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4873 2 365 PP2C-type Phosphatase Gene Family AT5G53140 65.013 4.78e-173 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4873 K17506 - gmx:100805795 536.569