Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4870 ATGAATTTTCATCAAGACAAATTTGTTAGATTCCAGGACTGGAATTCAGACAAGGGTTCTGAGATAAACTCTCCTGCAATTCACGCATCAGGCTCGCGGAGAATTAGAACTACACTATATTCAGTTTCCGCCAAGTTTCAGAGGGGTTTTGAATCTAGTTCTGAGAGGATAATGAGATTTGCGAAATCATTCAAATCTTTTCCTCAGAGCAGTGTTCCTGCTAAATGTTTTAGTTCTAGAAAGAAAATCCTTGATCCACAGGGTCCTTTCCTTCAAAAGTGGAACAAGATATTTGTGCTATCGTGTCTTATTGCTGTATCACTAGATCCTTTGTTCTTCTACGTACCTGTGATTGATGATGACAAGAAATGTCTTTCACGGGACAGAAAAATGGAAACTACGGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGAACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTAAAGATGCTTGGGCAATAGCAAAGAGGTATCTGGCATCATACTTCTTCATTGACATACTTGCCGTTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATTCCAAAGCTGAGAGGCTCTGAATCACTGAATACAAAGAACTTGCTAAAATTTGTTGTCTTCTTCCAATATTTTCCACGGTTTATACGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTTACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAACGTGCCTGTAGAACAAATATCACATGTAACAAGGCGGATCTGTATTGTGATGATCGTCGTGTCTTAGGCCCAACAATTTCAACGTTCCTCAATGCTTCTTGCCCAATACAAACTCCAAATACAACACTCTTTAATTTTGGAATATTCCTTGACGCCCTTCAATCAGGGGTTGTAGAGTCAACAGATTTTCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTGAGTGCTCTTGGTCAGAACCTGGAAACAAGTACCTATGTTTGGGAAATCTCCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTGTTATTTGCCTTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATAGATTACTTCCTGACAGCCTTAAAGAAAGAATCAGACGACACGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACCATTTGATTCGTGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATATTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTTTACACGAAAGAAAGCTGCATTGTCCGGGAAGGAGACCCTGTTGATGAAATGCTTTTCATAATGCGCGGCAAGCTATTGACCGTGACAACTAACGGTGGAAGAACGGGCTTCTTTAACTCTGAATTCCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCATTAGATCCTCATTCCTCATCCAACCTCCCCATCTCAACAAGAACTGTCCAAACTCTTGCAGAAGTGGAAGCCTTTGCTCTGAAAGCTGATGACTTGAAGTTTGTCGCGTCTCAATTCCGGCGTCTTCACAGCAAGCAGCTTCGCCACACTTTCAGGTTCTACTCACAACAATGGCGCACTTGGGCTGCATGCTTCATACAAGCAGCGTGGAGGCGGTATAGTAAGAGGAAGCTTGAAGAGTCTCTCAAGGAAGAGGAGAATAGGCTGCAAGATGCTTTGGCCAAGCAAGGTGGTACTTCACCTAGTCTTGGTGCCACAATATATGCTTCTAGATTTGCTGCTAATGCACTGAGAGCTTTAAGGAGAAATAACACTAGGAAGACCAGGGTACCAGAGAGATTACCACCTATTCTGCTTCAGAAACCAGCTGAACCTGATTTTACTGCTGAAGAGCAGTAG 2151 0.4189 MNFHQDKFVRFQDWNSDKGSEINSPAIHASGSRRIRTTLYSVSAKFQRGFESSSERIMRFAKSFKSFPQSSVPAKCFSSRKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDDKKCLSRDRKMETTATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVKDAWAIAKRYLASYFFIDILAVLPLPQVVILIIIPKLRGSESLNTKNLLKFVVFFQYFPRFIRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQRACRTNITCNKADLYCDDRRVLGPTISTFLNASCPIQTPNTTLFNFGIFLDALQSGVVESTDFPQKFFYCFWWGLRNLSALGQNLETSTYVWEISFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLKERIRRHEQYKWQETRGVDEDHLIRDLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAMCDRLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLAEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLKEEENRLQDALAKQGGTSPSLGATIYASRFAANALRALRRNNTRKTRVPERLPPILLQKPAEPDFTAEEQ* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4870 716 Gene3D Helix hairpin bin 413 478 - -
Lja1g4870 716 SUPERFAMILY Voltage-gated potassium channels 85 409 - -
Lja1g4870 716 SMART cnmp_10 487 618 IPR000595 -
Lja1g4870 716 MobiDBLite consensus disorder prediction 688 716 - -
Lja1g4870 716 CDD CAP_ED 487 618 IPR000595 -
Lja1g4870 716 Pfam Cyclic nucleotide-binding domain 507 598 IPR000595 -
Lja1g4870 716 SUPERFAMILY cAMP-binding domain-like 416 609 IPR018490 -
Lja1g4870 716 Gene3D - 96 411 - -
Lja1g4870 716 Gene3D Jelly Rolls 485 605 IPR014710 -
Lja1g4870 716 Coils Coil 639 659 - -
Lja1g4870 716 ProSiteProfiles IQ motif profile. 623 652 IPR000048 GO:0005515
Lja1g4870 716 ProSiteProfiles cAMP/cGMP binding motif profile. 487 571 IPR000595 -
Lja1g4870 716 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 714 - -
Lja1g4870 716 Pfam Ion transport protein 94 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g4870 716 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4870 Lja-Chr1 66572879 66579513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4870 1 715 Ion Channels AT5G53130 78.838 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4870 K05391 - gmx:100815774 1254.2