Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4868 ATGGACACTTGTTATTTGTTAGAGTCAAATTCAAGGGCGCCTAGAAAAAGATACTTTCATCAAGGGAATCATCCATTAAATGTCTACCCATTTGAGGCTTTTGCGTTTGGCTCATGGAAACCCGTGGAGCTCATTAAAATTGAATCGGGAAGGGTCATCTTACATTTTATGGACAAACAAGAGATAGCTCTAGATAAATGTTTTTCAGACATGCGGCCAAAGTCAAAGATAACTACTTTTGCAGACATGCGAATAAGGTCAAGGAAAGCTACTTTATCTGATTGCGCATCCTTCTTACGATGTGGGATTGATGTGTGTGCACTATCAAACTTTCAAAGTAGTGATGATTCAAATCAATCAAATTCCAATCCGGTCTGGGCTGATGTTAAAATAAATTCCATTGAGAGGAAACCCCACAATCCTGAATGCTCATGTGTGTATCATGTAAGATTTTACACAAATCAAGGTTCCCTTGGGTCATACAAAAATACTTTGAGTAAGGATGTCCAAGAAGTTGGATTAAATCAAATTTTCATCCTTCAAAAGCTTGGACGTAAAAGCCTTGAAGATCAACCATTCCGGTGGGACTCGTCTGAAGACTACATCAGCAGACAACAAACGAGGTTGTCCTCAGGAAAATTTGTTGGCGACATTTCCTGTCTAGCTTATATATCACTTATGAAGAACATGTGCTTTTGTGTGAGATCTTTGCAAAACAAGATTCTCTACCAAATCATGGGAATTGATACAAGGTATTCTGATTCTCACATAAGAGCTATGAACTTCAAACTCAAAGGTCACATGTCAAAATCCTCTATTTTTGAACTTGACACTATGAGCATTGTCCCTGTTGTGCAAAATAATGAAGCAGAAGTGTTGCCACCATTACGACGCTCGACACGTCGAATCAGGGAACCTGAACGTTACTTGGGCTATTGTGATGATGGTTCAGGTTTTGTATATCAAACTAGGAAATCCAAGATGAGCACAAGGGAAAATGATGAGAAGTTGGCACTAGTGAATTACACTTTCAAAGGGGATGTTGAAACTAGTGTTCAAAAGGTTGATACAAAGGTGAGTTATGATGTTGATGTCATTGAAAAGGAACATCTTAAACCAATTTCTGTTGTTCTAGCTCATGAAAAAATTGGTTTAGATGCTCTTGAACCCCGAATTCTCCAAGAGAGTGGTGAATGCTCTTCCCGCTTTGATGATATTTGGGGATCAAAGAACAATGATGATGGTGGCATGTGCAATATTCAGCTCAGTGGCAATGCACAAGTGATTGGAGAAACCTCTTCATGTCGTTATTATAATCTCAGAAGCGGTAAGAAGTATCATAGGAAGGATTTGCTTGATTCGGATGATATGATGATGGATCTAGAACCCAAATGGGAGGGGCTGAATTCTAAAAGAGGAGAAGAACTTAAGAGGCGACGTCGTTCAGATTTTTCAAGAAATAGAAATAATGAGGAAGATAGTGATGAAGAACAAGCTCGGAGACGCAGGGCCTTAGATGTAAATGCATCCAAGGAAATGATAGATTCTTATTTAAAAGATATGGATAAATTACCAGCAATAGAAGAAGCCCCTGTTCCTGAAAAATGGAAGGAAGCAGTCAACTTTGGAAAAGGCAAGGAAACTGAGAAAACTCAAAGAAAAGAGCAGGTGGAGGAAGAAGTTTCTGAAATCGAAATGTTATGGAGAGAAATGGATGATGCAATGATAGAGGGTTTTCTTCAAGAACAAACGGAGGATTTAAGTGCTCCAACTAAGGAAGAGACTACCAGAACTTGTGAGCATGATTATAGATTAGATGAGCAACTTGGAATCTATTGTCATAGATGCGGCTTTGTGAAGGAAGAGATAAGATACATCATGCCATCCTTTTCAGATGCTAATGATAAATCAAAGTCTGATGATCAGCAAAATGTTGATGATGATCCAAAGGGTGATGATAATGATAATGATATCCCTTTGCTTCTTACTAATGCTGCTTGTGATGAGCCTATATCTATTGAAAATGAAAGTGTGTGGGGATTCATTCCTGAACTTGGAGAAAAAATGCTCCTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGAACCCAACCCATATGGAAGCACAATCTGAAAATAGAGGAGGTTGTGTGATATCTCATGCTCCTGGAGCTGGAAAAACATTCCTCACAATTTCATTTCTTATTAGCTATTTGAAGTTATTCCCAAACAAGAAGCCCTTAATCCTTGCTCCAAAAACCACACTTTACACTTGGTACCAAGAGTTTATCAAGTGGAATTTTCCAATGCCAGTGCATCTAATTCACAGCCGTAGAAGCCAGAGAAGTTTCAGTGAAAACTCATTTGCTCTTCCTGGAATTCCAAATCCGAATGAGGATGTAAAGCACACTATGGACTGCTTGGGAAAGATTCAAAAGTGGCATGCGCACCCTAGTGTTTTGGTCATGGGTTACACTTCATTTTTATCATTAATGAATGAGAATTCAAAGTATGAACACAAAAAGTACATGGCTAAAGCCTTGAAGGAAAGTCCTGGGATTATCGTGCTGGATGAAGGGCACAATCCGAGAAGCACAAAATCGAATTTGAGGAAATGGTTGATGAAAGTAAAGACAGAACTGAGAATACTCCTCTCTGGCACATTATTTCAGAACAATTTTGGTGAGTATTTTAACACACTTTGCTTGGCAAGACCAAGGTTTGTTCATGAAGTTCTGCAAGAGTTAGATCCAAAATATGTGAAGAGTGAAGCAGAAAAAAAAGCTCCTCATTTAGTCGAGTCACGGGCTAGGAAATTCTTCATGGATAAAATTGCGGTGAAAATTGATGCAGGTAATGAAAATGTTGAGGAGAAGATGATGGGTCTTAATATGTTGAAGAAAATCACAAGTGGTTTTATTGATGTTTATGATAGCGGGAATGCAGATAGTATGTTACCTGGTTTACAAATCTATACTTTGCTGATGAACAATACTGAGAAGCAGAGTGAAATCTTGCAGAAACTGCAGAAGAAAATGAACCGGAGCGGAGGGTACCCTCTTGAGGTAGAGTTTCTGATAACCCTTGTGTCAATACATCCATGGTTGATCTCAACAACCAGATGTGCCAAAAAGTTTTTCACTTCGAGCCAATTGGAGCAGCTAGAGAAATGTAAGATTGATATGAAAATAGGATCAAAGGTGAAATTTGTTATGAGTCTTGTCTTCCGCGTGGTCAAGATGAAGGAGAAAGTTATTATCTTTTGCCGCAACCTTGCACCAATGTGGCTGCTTCTAGAGTTGTTTGAGACGTACTTCAAGTGGAAAATGGGAGTAGAAATCTTGACACTTCATGGAGAACAAGAGCTTTTTGAGCGCGGCAAAGTCATTGATAAGTTTGAGGACCGTCGTGGAGCCTCAAAGGTTCTCCTCGCTTCAATCAGCGCTTGTGCAGAAGGTATTAGTCTGACAGCAGCTTCACGTGTGATTTTCTTGGACTCAGAGTGGAATCCGTCCAAAACAAAGCAGGCTATTGCACGGGCTTTCCGTCCTGGTCAGGAAAAAGTCGTTTATGTTTATCAACTATTAGCTGCAGGATCATTTGAAGAGGATAAATATAAGAAAACCAATTGGAAAGATTGGGTTTCCAGGATGATTTTCAGTGAGGATTTTGTGGAGGACCCTTCCAAATGGCAGGCACAGAAAATTGAAGATGATGTGCTGAGAGAAATGGCTGAGGTGGATAAGTATAAATCAATCCATCAAATTGTGAAGAATGAAAAGGCCTCAACAAACTTATGA 3819 0.393 MDTCYLLESNSRAPRKRYFHQGNHPLNVYPFEAFAFGSWKPVELIKIESGRVILHFMDKQEIALDKCFSDMRPKSKITTFADMRIRSRKATLSDCASFLRCGIDVCALSNFQSSDDSNQSNSNPVWADVKINSIERKPHNPECSCVYHVRFYTNQGSLGSYKNTLSKDVQEVGLNQIFILQKLGRKSLEDQPFRWDSSEDYISRQQTRLSSGKFVGDISCLAYISLMKNMCFCVRSLQNKILYQIMGIDTRYSDSHIRAMNFKLKGHMSKSSIFELDTMSIVPVVQNNEAEVLPPLRRSTRRIREPERYLGYCDDGSGFVYQTRKSKMSTRENDEKLALVNYTFKGDVETSVQKVDTKVSYDVDVIEKEHLKPISVVLAHEKIGLDALEPRILQESGECSSRFDDIWGSKNNDDGGMCNIQLSGNAQVIGETSSCRYYNLRSGKKYHRKDLLDSDDMMMDLEPKWEGLNSKRGEELKRRRRSDFSRNRNNEEDSDEEQARRRRALDVNASKEMIDSYLKDMDKLPAIEEAPVPEKWKEAVNFGKGKETEKTQRKEQVEEEVSEIEMLWREMDDAMIEGFLQEQTEDLSAPTKEETTRTCEHDYRLDEQLGIYCHRCGFVKEEIRYIMPSFSDANDKSKSDDQQNVDDDPKGDDNDNDIPLLLTNAACDEPISIENESVWGFIPELGEKMLLHQKKAFEFLWQNIAGSMNPTHMEAQSENRGGCVISHAPGAGKTFLTISFLISYLKLFPNKKPLILAPKTTLYTWYQEFIKWNFPMPVHLIHSRRSQRSFSENSFALPGIPNPNEDVKHTMDCLGKIQKWHAHPSVLVMGYTSFLSLMNENSKYEHKKYMAKALKESPGIIVLDEGHNPRSTKSNLRKWLMKVKTELRILLSGTLFQNNFGEYFNTLCLARPRFVHEVLQELDPKYVKSEAEKKAPHLVESRARKFFMDKIAVKIDAGNENVEEKMMGLNMLKKITSGFIDVYDSGNADSMLPGLQIYTLLMNNTEKQSEILQKLQKKMNRSGGYPLEVEFLITLVSIHPWLISTTRCAKKFFTSSQLEQLEKCKIDMKIGSKVKFVMSLVFRVVKMKEKVIIFCRNLAPMWLLLELFETYFKWKMGVEILTLHGEQELFERGKVIDKFEDRRGASKVLLASISACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQEKVVYVYQLLAAGSFEEDKYKKTNWKDWVSRMIFSEDFVEDPSKWQAQKIEDDVLREMAEVDKYKSIHQIVKNEKASTNL* 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4868 1272 SMART helicmild6 1106 1191 IPR001650 -
Lja1g4868 1272 MobiDBLite consensus disorder prediction 631 657 - -
Lja1g4868 1272 CDD SF2_C_SNF 1065 1202 - -
Lja1g4868 1272 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1079 1243 IPR001650 -
Lja1g4868 1272 Pfam SNF2-related domain 698 917 IPR000330 GO:0005524|GO:0140658
Lja1g4868 1272 Gene3D - 669 951 IPR038718 -
Lja1g4868 1272 Gene3D - 994 1271 IPR027417 -
Lja1g4868 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 915 IPR027417 -
Lja1g4868 1272 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 714 913 IPR014001 -
Lja1g4868 1272 Pfam Helicase conserved C-terminal domain 1075 1190 IPR001650 -
Lja1g4868 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 858 1229 IPR027417 -
Lja1g4868 1272 SMART ultradead3 685 921 IPR014001 -
Lja1g4868 1272 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 30 1270 IPR044567 GO:0080188
Lja1g4868 1272 MobiDBLite consensus disorder prediction 472 506 - -
Lja1g4868 1272 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 30 1270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4868 Lja-Chr1 66525512 66530699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4868 1104 1209 RAD5 or RAD16-like Gene Family AT5G05130 41.121 2.65e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g4868 SNF2_N 7.4e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4868 K10875 - gmx:100811703 1228.39