Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4865 ATGTCACTCATAATTATTGGTGCTGCTGCATCCACAGGATCATCAAGGATAAGCCTTGTGCAGGTGGTGTTGGTAATAATGATATTGCTTCTTCTCCTATACTGTGAAAGTTGTAGCTGCAGCCAGCAACAAGTGTGTTCTCGTTCGTGCGGGGTTCATAACATAACACACCCTTTCCGGCTGAAGGACGATCTGAAAGCTTGTGGTGACTCGAGGTACGATCTAATCTGCGAGGCCAACCAATTGATGTTGCATTTGGGAATTGGGAAATACAGAGTAGAGTCAATTAATTACAACAACTTCACAATACGACTAGTGGATGCCAATCTTCCACACCTTCATTACTTACCAATAACAACAAGTTACTCTTTAGGCCTCTACAATTTCAGTTTCAACTATGATGGACCATATCGACTGTATCAGCAGTCTTGGTACAGTGCCTATAACAGATTGGTTAGTTCTATGTTATATGTGAGCTGTCCGAATGGGGTGGATTTCTCTGGTGGTGTACAAGTTGATGACGACGGTGCAGCTTGCTTCAACAGTTCTTCTTCTTGGTATGGGAAATCATTCTACCATGTCAATGCCACTGACAAGTCTCTATGGGATTTGGGGCTGGGAGACTCGTGTAGTGTAGAGTTTATGTACCTGACATCGTGGCATGATGATGATGAAAGCATCAACATTTCATGTACCAAGATTCGTGACATGCTGCTTTATGGCTTTGAGCTTAACTGGGCAAACAGTCTTTGTAAAGAGGGCCACTATGCCAAGCTCAAAACGAACCAGTGGCATTGTCAACGAGGCAGGTTTTATTTTGGGCTTTATCAACTTTTGACAATATTAGAAATCATTGCTTTGCTATGTGGTGCCAAATTTGTTCTTGGAGCGCCATGCTTCGTTGTGTTATTAATCTATAAATGGCGACGAAGGCATTTATCCATGTACGATGGCATTGAACATTTTCTTCGAAGTGACCATAACATCGTGCCTATAAGGTACTCTTACAAAGACATCAAGAGCATAACACAAAAATTTAAAACTAAACTAGGAAATGGAGGCTTTGGTTCTGTCTTCAAAGGACAATTACGAAGTGGTCGTCTTGTAGCTGTCAAGATGTTGGACAAAGCCAAGACAAATGGTCAAGACTTCATCAATGAAGTTGCCACCATTGGTACCATTCATCATGTTAATGTTGTTCAGCTCATTGGTTATTGTGTGGAGGGATCAAAGCGTGCTCTTATATATGAATTCATGCCAAATGGGTCTCTTGAAAAGTACATCTTTTCTCATGAAGAGAGTTCTTCTCTAAGTTGTGAGAAATTATATACCATTTCTCTTGGAGTGGCTCATGGCATTGAATACTTGCATAATGGCTGCAACATGAAAATTCTGCACTTTGACATCAAGCCTCATAACATTCTTCTTGATGAGAATTTCAATCCAAAAGTTTCTGATTTTGGACTTGCAAGACTCTGTCCTACAGATAATAGCATTGTGTCTTTGACCGCAGCAAGAGGAACCATAGGATACATGGCCCCAGAGCTATATTACAGAAATGTTGGCAATGTGTCCTACAAAGCTGATGTGTATAGCTTTGGGATGTTACTTATGGAGATGGCTAGTAGAAGGAAGAACTTGAATGCATTGGCTGAGGAATCTAGCCAAATTTATTTCCCTTTTTGGGTTTATGATCGGTTATGTGATGGAAGGGAAATCACAATTGAAAATGACACGGATGAGGAGATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACAAAGCCTGGCGATCGTCCTCCAATGGATAAAGTGTTGGAGATGCTTGAAGATCATGAGGAATTACAAATGCCTAAAGAGCCTTATCTATATGCACAAGATTTACCAGCAGAGGATGCTAGAGATTATAGCAACTCAAGTCCATCATCCTCTGATGGAGTAGACACTAATGACAGCACATGA 1977 0.4082 MSLIIIGAAASTGSSRISLVQVVLVIMILLLLLYCESCSCSQQQVCSRSCGVHNITHPFRLKDDLKACGDSRYDLICEANQLMLHLGIGKYRVESINYNNFTIRLVDANLPHLHYLPITTSYSLGLYNFSFNYDGPYRLYQQSWYSAYNRLVSSMLYVSCPNGVDFSGGVQVDDDGAACFNSSSSWYGKSFYHVNATDKSLWDLGLGDSCSVEFMYLTSWHDDDESINISCTKIRDMLLYGFELNWANSLCKEGHYAKLKTNQWHCQRGRFYFGLYQLLTILEIIALLCGAKFVLGAPCFVVLLIYKWRRRHLSMYDGIEHFLRSDHNIVPIRYSYKDIKSITQKFKTKLGNGGFGSVFKGQLRSGRLVAVKMLDKAKTNGQDFINEVATIGTIHHVNVVQLIGYCVEGSKRALIYEFMPNGSLEKYIFSHEESSSLSCEKLYTISLGVAHGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDNSIVSLTAARGTIGYMAPELYYRNVGNVSYKADVYSFGMLLMEMASRRKNLNALAEESSQIYFPFWVYDRLCDGREITIENDTDEEMKLAKKMMIVALWCIQTKPGDRPPMDKVLEMLEDHEELQMPKEPYLYAQDLPAEDARDYSNSSPSSSDGVDTNDST* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4865 658 Gene3D Phosphorylase Kinase; domain 1 324 418 - -
Lja1g4865 658 Pfam Protein tyrosine and serine/threonine kinase 345 614 IPR001245 GO:0004672|GO:0006468
Lja1g4865 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Lja1g4865 658 SMART serkin_6 344 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4865 658 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Lja1g4865 658 MobiDBLite consensus disorder prediction 638 658 - -
Lja1g4865 658 Pfam Wall-associated receptor kinase galacturonan-binding 46 107 IPR025287 GO:0030247
Lja1g4865 658 PANTHER RUST RESISTANCE KINASE LR10-RELATED 281 636 IPR045874 GO:0004672
Lja1g4865 658 PANTHER RUST RESISTANCE KINASE LR10-RELATED 20 253 IPR045874 GO:0004672
Lja1g4865 658 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4865 658 MobiDBLite consensus disorder prediction 625 658 - -
Lja1g4865 658 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 281 636 - -
Lja1g4865 658 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 20 253 - -
Lja1g4865 658 SUPERFAMILY Protein kinase-like (PK-like) 325 615 IPR011009 -
Lja1g4865 658 Gene3D Transferase(Phosphotransferase) domain 1 419 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4865 Lja-Chr1 66414305 66417642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4865 17 644 Receptor kinase-like Gene Family AT5G38260 35.894 5.57e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g4865 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4865 - - aip:107605930 724.546