Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4864 ATGAGTGCCAAAGAAAGACAGACTCCAGCTAAGAAAATGGGTACTTGTGTTGGATTGTTATTGTTCATGCTTTGCTTCAATGTTGTTAGTGTGAAGCTTGCACTTGGCAATGACATAGACACAGGCATAGTTAAGTGTTCAGAATCATCATGCGGAAATCAGGTGATTCGATTCCCTTTCCGAATCAGAGGCCACCATCCTACAACCTGTGGCTATCCGGGGTTTGATTTATCTTGTTCCTCAGATAACAACACAGTGATTGAACTCCCTCACTCAGTGAAGCTCAATGTCAAAAACATTGATTACAGACACCAAACTATTGAATTATCTGATCCACATGGCTGTCTTCCCAAGCAGCTCCAACACCTCACTTTATCAGCCTCCCATTTCCGGTTAAAGCCAGTCAAGTATGTTGGCTATAACTTCTTCAATTGTTCACTGATCGACAGAGATTCAGATTTGGACTACTATTTGGTTCCGTGCCTCAATACCTCAACCGCTCGAGTGTACGCCATTCCGTCCACTAAGATAGTGGAATACTTGCCCCTGTGGTTTTGCACCAAAATGTTTAATGTTTCTTCCAAACCTTCTGATTTTAAAATTCGTGACAACTTTCTTCGTTTGGAATGGTCAGAGCCCAACTGTAAGCATTGTGAATCAAAAGGGAGAACATGTGGATGGAAGAATCATACCGCCAACAATCAAGTATATTGTTTCCGGGATCACAAAGGTTCTTCAACAGCTCTAGTGACTACAGGGTCAGTCCTAGGGTCCTTGTTCTTTATTCTGTTGACTGGTGCAGTCTACCACATCTATGACTCTTACAGACTGAGGAAAGAAAAACAAGCAATATTTGAAAAATTTCTTGAGGACTATAGAGCTCTTAAGCCCACCAGATACTCTTATGTAGAAATGAAGAGAATCACCAACAATTTTGAGCACAAGTTAGGAGAGGGAGCCTTTGGAACCGTGTTTAAAGGAAGCATTTCCAAAGAAATTCCTATTGCTGTGAAGATCTTGAATATTTCTCACGGAAAGGGGGAAGAATTCATCAATGAAGTTAGCACCATGGGTAGAATCCACCATGTTAACATTGTTCGCTTGGTGGGTTTCTGTGCTGATGGCTTTAGAAGAGCTCTTGTTTATGAGTTCTTACCAAATGGTTCACTGCAGAAGTTCATCAATTCACCGGACAACAAGCAGAACTTCCTTGGTTGGAAGAGGCTTCACGAAATTGCTTTAGGAATAGCCAAGGGAATTGAGTATCTTCACCAAGGTTGTAATCAACGCATTCTCCACTTCGATATCAAGCCTCAAAATGTGCTGCTAGACCATAACTTTGCTCCCAAAATATGTGACTTTGGTCTAGCTAAATTGTGCTCAAGGGATCAGAGCATAGTGTCAATGACTGCAGCTAGAGGAACTTTGGGGTACATTGCTCCTGAAGTGTTCTCAAGAAACTTTGGCAATGTATCTTACAAGTCAGATGTTTATAGCTATGGAATGATGCTGCTTGAAACAATAGGAGGGAAGAAGGTCACGGAAGACATGGAGGAAAATACTAGCCAGGTTAACTACCCGGAATGGATTCATAATCTTGTAGAAGAACATGAGGAAATGAGAATCCATATTGAAGAAGAAGGGGATGCAGAAATTGCAAGGAAACTAGCTATTGTGGGACTTTGGTGCATCCAGTGGCATGCCATGGATAGACCATCAATGCAAATGGTGCTTCAAATGTTAGAAGGAGATGCAGACACAACTCCAATACCTCCTAATCCTTTCACTTCTTCAGCAGGTGCAGGGCCAAGGAGAACAAGTGCAACTGTGAGTGTTGCTGCAAGACAACTAACCCAAGATTTAGAAGTCATCCAAGAGTTAGAGTGA 1887 0.4192 MSAKERQTPAKKMGTCVGLLLFMLCFNVVSVKLALGNDIDTGIVKCSESSCGNQVIRFPFRIRGHHPTTCGYPGFDLSCSSDNNTVIELPHSVKLNVKNIDYRHQTIELSDPHGCLPKQLQHLTLSASHFRLKPVKYVGYNFFNCSLIDRDSDLDYYLVPCLNTSTARVYAIPSTKIVEYLPLWFCTKMFNVSSKPSDFKIRDNFLRLEWSEPNCKHCESKGRTCGWKNHTANNQVYCFRDHKGSSTALVTTGSVLGSLFFILLTGAVYHIYDSYRLRKEKQAIFEKFLEDYRALKPTRYSYVEMKRITNNFEHKLGEGAFGTVFKGSISKEIPIAVKILNISHGKGEEFINEVSTMGRIHHVNIVRLVGFCADGFRRALVYEFLPNGSLQKFINSPDNKQNFLGWKRLHEIALGIAKGIEYLHQGCNQRILHFDIKPQNVLLDHNFAPKICDFGLAKLCSRDQSIVSMTAARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGKKVTEDMEENTSQVNYPEWIHNLVEEHEEMRIHIEEEGDAEIARKLAIVGLWCIQWHAMDRPSMQMVLQMLEGDADTTPIPPNPFTSSAGAGPRRTSATVSVAARQLTQDLEVIQELE* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4864 628 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Lja1g4864 628 Pfam Wall-associated receptor kinase galacturonan-binding 46 111 IPR025287 GO:0030247
Lja1g4864 628 PANTHER RUST RESISTANCE KINASE LR10-RELATED 46 627 IPR045874 GO:0004672
Lja1g4864 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Lja1g4864 628 SUPERFAMILY Protein kinase-like (PK-like) 294 582 IPR011009 -
Lja1g4864 628 MobiDBLite consensus disorder prediction 590 611 - -
Lja1g4864 628 ProSiteProfiles Protein kinase domain profile. 310 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4864 628 Gene3D Phosphorylase Kinase; domain 1 286 384 - -
Lja1g4864 628 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4864 628 PANTHER RECEPTOR-LIKE KINASE 46 627 - -
Lja1g4864 628 Gene3D Transferase(Phosphotransferase) domain 1 385 588 - -
Lja1g4864 628 MobiDBLite consensus disorder prediction 585 611 - -
Lja1g4864 628 SMART serkin_6 310 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4864 Lja-Chr1 66410840 66414068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4864 44 611 Receptor kinase-like Gene Family AT1G66910 36.378 5.22e-111 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g4864 Pkinase 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4864 - - lja:Lj2g3v1499280.1 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4864 1 66410840 66414068 Lja1g4864 1 66410840 66414068 ECH