Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4863 ATGTCTTCCATTGCTGCATTATCACGATCAAGGATAATAAGTCTTGTGGTGGTGGTGGTGGTGGTAATCCTGTACTGTGAAAGATGTAGCTGCAGCCAACAAGTGTGTTCTGGTTGGTGCGGGGTTCACAACATAAGCCACCCTTTCCGGCTGAAAGACGATCCACTACAGTGTGGTGATCATAGGTACAACCTAACCTGCGAGGCCAATCAGTTGATGGTGTATTTGGGAATTCGGAAAGGAAAATACAGAGTAAAGTCAATTGATTACAACAATTTCACAATACGACTAGTGGATGCCAATCTTCAACATCTTCATTACTTCCTAATAACAAGTTATTCTTTAGGCCTCTACGATCTCAGTCTCTCCTATTACGGATCATATCGCATGTATCTGAAAAGAAATAGATTGGTAAATTCCATGTTATATGTAAGCTGTCCGACTGGGGTGGAATCCCCTGGTGGTGTGTACGTTGATGACGGTGCAACTTGCATGAATAGTTCTTCATATGGGAAATCATACTACCATGTAAATGTTAGTGACAAATCTCTATGGAATTTGGGGCTTGGAGATTCATGTCGTGTAGAGTTTATGTACCTCACATCATGGCCTGATGAAACCAACATTTCATGCACCAAGATTCGCGACATACTGTTTTATGGCTTTGAACTTTCATGGCTGAACGGTCTATGTAAAGAGAACGAGTATCTCGTGCTCGACAACAGCAACCACCGTCTTTGTCGACGAGGCATCAGTTTGGAGCTTTGGCAATTCACTTTAATTTCAATATTAGAATGCATTGCTTTGATATGTGGTGCTAAATGTGTTCTTGGAGCGCCATGTTTCACTGTGTTATTAATCTATAAACTGCGACAGAGGCATTTATCTATGTACGAGGGCATTGAAGATTTTCTACGAAGTGACAATAACATCATTCCAATAAGGTACTCTTACAGAGACATTAAGAGGATGACACAAAAATTCAAGACAAAACTTGGGAATGGAGGCTATGGCTGTGTATTCAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCTAGAGATTTCATCAATGAAGTTGCCACCATTCATCATGTTAATGTGGTTCAGCTCATTGGTTTTTGCGTAGAGGGATCAAAGCGTGCTCTTTTATACGAATTCATGCCAAATGGGTCTCTAGAAAAGTACATTTTTTCTCATGAAGAGTGTTCTTCTTTAAGTTGCGAGAAATTGTATGCTATTTCTCTTGGTGTGGCTCATGGTATTGAATACCTGCATAATGGCTGCAACATGAAAATTTTGCACTTTGACATCAAGCCTCATAACATTCTTCTTGATGAGAATTTCAATCCAAAAGTTTCTGATTTTGGACTTGCAAGGCTCTGTCCTACAGATAATAGCATTCTATTTTACAGAAATGTTGGCACTGTGTCCTACAAAGCTGATGTGTATAGCTTTGGGATGTTACTTATGGAGATGGCTGGTAGAAGGAAGAACTTGAATGCATTGGCTGAGGAATCTAGCTTTAGCCAAATATATTTCCCTTTCTGGGTTTATGACCAGTTAAGTGATGGAAGGGAAATCACAATTGAAAATGACACTGATGAGGAAATGAAGATGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACAAAGCCTGGTGATCGTCCGCCAATGGATAAAGTGTTGGAGATGCTTGAAGATGAGGAATTACAAATGCCTAAAAAGCCTTATCTATATGCACAAGATTTACCAGTAGAGTATGCTACAGATGATAGCAACTCAAGGCCATCGTCCTCTGGAGAGGATACTAATGACAGCACATGA 1833 0.4021 MSSIAALSRSRIISLVVVVVVVILYCERCSCSQQVCSGWCGVHNISHPFRLKDDPLQCGDHRYNLTCEANQLMVYLGIRKGKYRVKSIDYNNFTIRLVDANLQHLHYFLITSYSLGLYDLSLSYYGSYRMYLKRNRLVNSMLYVSCPTGVESPGGVYVDDGATCMNSSSYGKSYYHVNVSDKSLWNLGLGDSCRVEFMYLTSWPDETNISCTKIRDILFYGFELSWLNGLCKENEYLVLDNSNHRLCRRGISLELWQFTLISILECIALICGAKCVLGAPCFTVLLIYKLRQRHLSMYEGIEDFLRSDNNIIPIRYSYRDIKRMTQKFKTKLGNGGYGCVFKGQLRSGRLVARDFINEVATIHHVNVVQLIGFCVEGSKRALLYEFMPNGSLEKYIFSHEECSSLSCEKLYAISLGVAHGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDNSILFYRNVGTVSYKADVYSFGMLLMEMAGRRKNLNALAEESSFSQIYFPFWVYDQLSDGREITIENDTDEEMKMAKKMMIVALWCIQTKPGDRPPMDKVLEMLEDEELQMPKKPYLYAQDLPVEYATDDSNSRPSSSGEDTNDST* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4863 610 SMART serkin_6 326 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4863 610 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 248 590 - -
Lja1g4863 610 Gene3D Transferase(Phosphotransferase) domain 1 387 579 - -
Lja1g4863 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Lja1g4863 610 Pfam Protein kinase domain 331 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4863 610 Pfam Wall-associated receptor kinase galacturonan-binding 36 99 IPR025287 GO:0030247
Lja1g4863 610 PANTHER RUST RESISTANCE KINASE LR10-RELATED 248 590 IPR045874 GO:0004672
Lja1g4863 610 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 233 - -
Lja1g4863 610 Gene3D Phosphorylase Kinase; domain 1 308 386 - -
Lja1g4863 610 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 233 IPR045874 GO:0004672
Lja1g4863 610 SUPERFAMILY Protein kinase-like (PK-like) 309 569 IPR011009 -
Lja1g4863 610 ProSiteProfiles Protein kinase domain profile. 326 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4863 610 MobiDBLite consensus disorder prediction 591 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4863 Lja-Chr1 66407767 66410478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4863 315 596 Receptor kinase-like Gene Family AT5G38280 47.319 1.08e-85 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g4863 Pkinase 4.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4863 - - aip:107605930 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4863 1 66407767 66410478 Lja1g4863 1 66407767 66410478 ECH