Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4862 ATGTTCTCTTGTTTTGGATTGTTATTGTTTATGCTTTGCTTCAATGTTGTTACTGTGGAGCTTGCACTTGGCAATGACATAGACACAGACATAGCTAACTGTCCAGATTTATCATGCGGAAATCAGGTGATCCGATTCCCTTTCCGAATCCTAGATCGCCATCCTACAACCTGTGGTTATCCGGGCTTTGATTTATCTTGTTCCTCTAAAAACAACACAGAGATTGAACTCCCTCACCCAGTGAAGCTCAACGTCAAAAACATTGATTACAGACACCAAACAATTGAATTATCTGATCCATATGGCTGTCTTCCCAAGCAGCTCCAATACCTCGCTCCATCAGCCTCCCAATTCCAGTTCCAGCAAGGTGGCTATCATTTTTTCAATTGTTCAGTGACGAACAAAGGTTCACTTTTGGACTACTCCTATTTGGTTCCATGTCTCAACACCTTAGGCTCTCAAGTGTATGCCATTCCATCCAGTACACTCATGGAGGACCTGCCCCTGTCGTTTTGCACAAAAATGTTTAATATTTCTTACAACCCTTTTGATTTTCAAACTGATCAGGACTATATTCTTCGCTTGACATGGTCTAAGCCCAACTGTCAACAATGCGAATCAAAAGGGAGAAGATGTGTGTGGAACAATCATGCTGCAAACAATGGAATATATTGTTTTTCCGATCATAAAGGTTCTTCAAAAGCTCTAGTGACTACAGGATCAGTCCTAGGATCCTTGTTCTGTATGCTCTTGACTGCTGCAGTGTACCACGTCTACGACATTTACAGACTGAGAAAAGAAAAAGAAGCAATGTTCGTAAAATTTCTACAAGACTATAGAGCTCTGAAGCCCACCAGATACTCTTATGTCGAAATTAAGAGAATCACCAAAAATTTTGAGCACAAGTTAGGAGAGGGAGCCTTTGGAACTGTGTTTAAAGGAAACATTTCGAAAGAAATTTCTATTGCTGTGAAGATCTTGAACATTTCACACGGAAATGGGGAAGAATTCATTAATGAAGTTAGCACCATGGGTAGAATCCACCATGTTAACATTGTTCGCATGGTGGGTTTCTGTGCTGATGGCTTTAATAGAGCTCTTGTATATGAATTCTTACCAAACGGTTCACTGCAGAAGTTCATCAATTCACCAGACAACAGGCAAAACTTCCTTGGTTGGAAAAGACTTTATGAAATTGCTTTAGGAATAGCCAAGGGAATTGAGTATCTTCACCAAGGTTGTAATCAGCGCATTCTCCACTTTGATATCAAGCCTCAAAATGTGTTGCTAGACCACAACTTTGCTCCAAAAATATGTGACTTTGGTCTAGCTAAATTGTGTTCAAGGGATCAGAGCATAGTGTCAATGACTGCAGCTAGAGGAACTCTGGGGTACATTGCTCCTGAAGTATTCTCAAGAAACTTTGGTAATGTTTCTGACAAGTCAGATGTTTATAGCTATGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACGGAAGACATGGAGGAAAATACTAGCCATGTTTACTACCCAGAATGGATTCATAATCTTTTAGAAGAACACGAGGAAATGAGAATCCATATTCAAGAAGAAGGGGATTCAAAAATTGCAAGGAAACTGGCTATTGTGGGACTCTGGTGCATCCAGTGGTATGCCATGAATCGACCTTCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGATGTAGAGACAGCTCCAATACCTCCTAATCCTTTTACTTCTTCAGCAGGTGCACGACCAAGGAGAACAATTGCTATTATGGGAGTTGCTGCGAGACAACTAACCAAAGATTTAGATGTAATCCAAGAGTAA 1842 0.4055 MFSCFGLLLFMLCFNVVTVELALGNDIDTDIANCPDLSCGNQVIRFPFRILDRHPTTCGYPGFDLSCSSKNNTEIELPHPVKLNVKNIDYRHQTIELSDPYGCLPKQLQYLAPSASQFQFQQGGYHFFNCSVTNKGSLLDYSYLVPCLNTLGSQVYAIPSSTLMEDLPLSFCTKMFNISYNPFDFQTDQDYILRLTWSKPNCQQCESKGRRCVWNNHAANNGIYCFSDHKGSSKALVTTGSVLGSLFCMLLTAAVYHVYDIYRLRKEKEAMFVKFLQDYRALKPTRYSYVEIKRITKNFEHKLGEGAFGTVFKGNISKEISIAVKILNISHGNGEEFINEVSTMGRIHHVNIVRMVGFCADGFNRALVYEFLPNGSLQKFINSPDNRQNFLGWKRLYEIALGIAKGIEYLHQGCNQRILHFDIKPQNVLLDHNFAPKICDFGLAKLCSRDQSIVSMTAARGTLGYIAPEVFSRNFGNVSDKSDVYSYGMMLLETIGGRKITEDMEENTSHVYYPEWIHNLLEEHEEMRIHIQEEGDSKIARKLAIVGLWCIQWYAMNRPSMQMVVQMLEGDVETAPIPPNPFTSSAGARPRRTIAIMGVAARQLTKDLDVIQE* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4862 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Lja1g4862 613 SMART serkin_6 297 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4862 613 Gene3D Transferase(Phosphotransferase) domain 1 372 575 - -
Lja1g4862 613 PANTHER RUST RESISTANCE KINASE LR10-RELATED 38 613 IPR045874 GO:0004672
Lja1g4862 613 Pfam Protein kinase domain 300 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4862 613 Gene3D Phosphorylase Kinase; domain 1 273 371 - -
Lja1g4862 613 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Lja1g4862 613 ProSiteProfiles Protein kinase domain profile. 297 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4862 613 PANTHER RECEPTOR-LIKE KINASE 38 613 - -
Lja1g4862 613 Pfam Wall-associated receptor kinase galacturonan-binding 34 99 IPR025287 GO:0030247
Lja1g4862 613 SUPERFAMILY Protein kinase-like (PK-like) 282 569 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4862 Lja-Chr1 66405219 66407327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4862 277 581 Receptor kinase-like Gene Family AT1G66910 53.055 1.95e-109 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g4862 Pkinase 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4862 - - lja:Lj2g3v1499280.1 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4862 1 66405219 66407327 Lja1g4862 1 66405219 66407327 ECH