Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4861 ATGGGCTCTTGTTTGGTAAAGATATCCTCTTGTGTTGGATTGTTATTGTTCATGCTTTGCTTCAACTTCAGTGTGAAGCTTGCACTTGGCACAGGCACAGGCACAGCTAACTGTCCAGATTTATCATGCGGAAATCAGGTGATCCGATTCCCTTTCCGAATCAGAGGCCACCATCCTACAACCTGTGGCTATCCGGGGTTTGACTTATCTTGTTCCTCAGATAACAACACAGTGATTGAACTCCCTCACTCAGTGAAGCTCAATGTCAAAAACATTGATTACAGACACCAAACTATTGAATTATCTGATCCACATGGCTGTCTTCCCAAGCAGCTCCAACACCTCACTTTATCAGCCTCCCATTTCCAGTTAAAGCCTGACAAGCATGGTGGCTATAACTTCTTCAATTGTTCACTGATGGATAGAGATTCAGATTTGGACTACTATTTGGTTCCGTGCCTCATCACCTCAACTGCTCGAGTATACGCCATTCCGTCCAGTAGAACCTTGGTGGGTCTTCCCTTGTTGTTCTGCACTAAAATTTTTAATATTTCTTACGGCCCTTTTAATTTTCAAAGAGATCAGGACACCTTTCTTCGTTTCACATGGACTGAACCCAAGTGTAAACAATGTGAATCAAAAGGGAGAACATGTGGATGGAAGAATCATTCTGCCAACAACCAATTATATTGTTTCCCCAATCACAAAGATCAGCTCATACCTCGGATCACCACACTCTTGCGGATCGTCTTTCAGCCGGAAAGGGTGGGATCTGTCCTAGGATCCTTGTTCTTTATGCTCTTGACTGCTGCAGTCTACCACGTCTATGACATTTACCGACTGAGAAAAGAAAAAGAAGCAATATTCGAAAAATTCCTACAAGACTACAGAGCTCTTAAGCCCACCAGATACTCTTATGTCGAAATTAAGAGAATCACCAACAATTTTGAGCACAAGTTAGGAGAGGGAGCCTTTGGAACCGTGTTTAAAGGAAGCATTTCCAAAGAAATTCCTATTGCTGTGAAGATCTTGAATATTTCTCACGGAAAGGGGGAAGAATTCATTAATGAAGTTAGCACCATGGGTAGAATCCACCATGTTAACATTGTTCGCATGGTGGGTTTCTGTGCTGATGGCTTTAATAGAGCTCTTGTATATGAATTCTTACCAAACGGTTCACTCCAGAAGTTCATCAATTCACCAGACAACAGGCAAAACTTCCTTGGTTGGAAAAGACTTCATGAAATTGCTTTAGGAATAGCCAAGGGAATTGAGTATCTTCACCAAGGTTGTAATCAGCGCATTCTCCACTTTGATATCAAGCCTCAAAATGTGTTGCTAGACCACAACTTTGCTCCAAAAATATGTGACTTTGGTCTAGCTAAATTGTGCTCAAGGGATGAGAGCATAGTGTCAATGACTGCAGCTAGAGGAACTCTGGGGTACATTGCTCCTGAAGTGTTCTCAAGAAACTTTGGCAATGTTTCTTACAAGTCAGATGTTTATAGCTATGGAATGATGTTGCTTGAAACAATAGGAGGGAGGAAGATCACGGAAGACATGGAGGAAAATGGTAGCCAGGTTTACTACCCAGAATGGATTCATAATCTTTTGGAGGAACACGAGGAAATGAGAATCCATATTGAAGAAGAAGGGGATGCAGAAATTGCAAGGAAACTAGCTATTGTGGGACTTTGGTGCATCCAGTGGCATGCCATGGATAGACCATCAATGCAAATGGTGCTTCAAATGTTAGAAGGAGATGCAGACACAACTCCAATACCTCCTAATCCTTTCACTTCTTCAGCAGGTGCAGGACTGAGAAGAACAAGTGCTACGTCGGGTGTTGCTGCAAGACAACTACCCCAAGATTTAGAAGTAATCCAGGAGTTAGAGTGA 1899 0.4234 MGSCLVKISSCVGLLLFMLCFNFSVKLALGTGTGTANCPDLSCGNQVIRFPFRIRGHHPTTCGYPGFDLSCSSDNNTVIELPHSVKLNVKNIDYRHQTIELSDPHGCLPKQLQHLTLSASHFQLKPDKHGGYNFFNCSLMDRDSDLDYYLVPCLITSTARVYAIPSSRTLVGLPLLFCTKIFNISYGPFNFQRDQDTFLRFTWTEPKCKQCESKGRTCGWKNHSANNQLYCFPNHKDQLIPRITTLLRIVFQPERVGSVLGSLFFMLLTAAVYHVYDIYRLRKEKEAIFEKFLQDYRALKPTRYSYVEIKRITNNFEHKLGEGAFGTVFKGSISKEIPIAVKILNISHGKGEEFINEVSTMGRIHHVNIVRMVGFCADGFNRALVYEFLPNGSLQKFINSPDNRQNFLGWKRLHEIALGIAKGIEYLHQGCNQRILHFDIKPQNVLLDHNFAPKICDFGLAKLCSRDESIVSMTAARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDMEENGSQVYYPEWIHNLLEEHEEMRIHIEEEGDAEIARKLAIVGLWCIQWHAMDRPSMQMVLQMLEGDADTTPIPPNPFTSSAGAGLRRTSATSGVAARQLPQDLEVIQELE* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4861 632 Pfam Wall-associated receptor kinase galacturonan-binding 38 103 IPR025287 GO:0030247
Lja1g4861 632 Gene3D Phosphorylase Kinase; domain 1 289 388 - -
Lja1g4861 632 Gene3D Transferase(Phosphotransferase) domain 1 389 592 - -
Lja1g4861 632 PANTHER RECEPTOR-LIKE KINASE 44 630 - -
Lja1g4861 632 SMART serkin_6 314 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4861 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Lja1g4861 632 SUPERFAMILY Protein kinase-like (PK-like) 297 586 IPR011009 -
Lja1g4861 632 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Lja1g4861 632 PANTHER RUST RESISTANCE KINASE LR10-RELATED 44 630 IPR045874 GO:0004672
Lja1g4861 632 Pfam Protein kinase domain 317 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4861 632 ProSiteProfiles Protein kinase domain profile. 314 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4861 Lja-Chr1 66342944 66357218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4861 39 598 Receptor kinase-like Gene Family AT1G66910 36.511 6.61e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g4861 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4861 - - lja:Lj2g3v1499280.1 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4861 1 66342944 66357218 Lja1g4861 1 66342944 66357218 ECH