Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4860 ATGACACTCATTATTGCTGCTGCATTATCATCAAGGATAAGGCTTGTGCAGGTGGTGTTGGTAATAATAATATTGCTCCTTTTCCTGCACTGTGAAAGTTGTAGCTGCAGCCAGGAACAACAAGTGTGTTCTGGTTCGTGCGGGGTTCACAACATAACACACCCTTTCCGGCTGAAGGACGATCCGAAAGCGTGTGGTGACTCGAGGTACGGTCTAATCTGCGAGGCCAACCAATTGATGTTGTATTTGGGAAGAGGGAAATACAGAGTACAGTCAATTAATTACAACAACTTCACAATACGACTTGTGGATGCCAATCTTCCACACCTTCATTACTTACCAATAACAACAAGTTACTCTTTAGGCCTCTACAATTTCAGTTTCAACAATGATGGACCATATCGACTGTATCAGCAGTCTTGGTACAGTGCCTATAACAGATTGGTAAGTTCTATGTTATATGTGAGCTGTCCGAATGGGGTGGATTTCTCTGGTGGTGTACAAGTTGATGAAGACGGTGCAGCTTGCATCAACAGTTCTTCTTCTTTGGATGGGAAATCTTTCTACCATGTCAATACCACTGACAAAACTCTGGAGATTTTGGGGCTGGGAGATTCGTGTCGTGTAGAGTTTATCTATCTTACATCGTGGCCTGACAACGAAACCAACATTTCATGCACTAAGATTCGTGACATGTTGCTTTATGGCTTTGAACTTTCCTGGATGTACAGTCTTTGTAAAGAGGACGAGTATCTCGGGTTCGATAATAACAACAAGCGTCAATGTAAACAAGACCGCAATTTGGAGCTTGGGCAAATCAATTTAATTGTAATATTAGGCTTCGTTGCTACGATATGCGGTGCCAAATGTGTTCTTGGCGCGCCATGTTTCACTGTGTTATTGATATATAAATGGAGACGGAGGCATTTATCAATGTATGACGGCATTGAAGATTTTTTACGAAGTGACAATAACATCATGCCTATAAGGTACTCTTACAAAGACATCAAGAGTATAACACAGAAGTTCAAGACAAAACTTGGGAATGGAGGCTTTGGTTCTGTCTTCAAAGGAAAACTTCGAAGTGGTCGTCTTGTAGCTGTCAAGGTGTTGGACAAGGCCAAGACAAATGGTCAAGACTTCATCAATGAAGTTGCCACTATTGGTACCATTCACCATGTCAACGTGGTTCAGCTCATCGGTTTTTGCGTGGAGGGATCAAAGCGTGCTCTTATATATGAATTCATGCCAAATGGGTCTCTTGAAAAGTACATCTTTTCTCACGAAGAGAGTTCTTCTTTAAATTGTGAGAAATTGTATGCTATTTCTCTTGGTGTGGCTCGTGGTATAGAATACCTGCATAATGGTTGCAACATGAAAATTCTGCACTTTGACATCAAGCCACATAACATTCTTCTTGATGAGAATTTCAATCCAAAAGTTAGTGATTTTGGACTTGCAAGACTCTGCCCTGCAGATAATAGCATTGTGTCTTTGACTGCGGCGAGAGGAACCATAGGATACATGGCACCAGAGCTCTTTTACAGAAATGTTGGCACTGTCTCCTACAAAGCTGATGTGTATAGCTTTGGGATGTTACTTATGGAGATGGCCGGTAGAAGGAAGAACTTGAATGCATTGGCTGAGGAATCTAGCTTTAGCCAAATATATTTCCCTTTCTGGGTTTATGACCAGTTAAGTGATGGAAGGGAAATCACAATTGAAAATGACACTGATGAGGAAATGAAGATGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACAAAGCCTGGCGATCGTCCTTCAATGGATAAAGTGTTGGAGATGCTTGAAGATCATGAGGAATTACAAATTCCTAAAATGCCTTATCTATATGCACAAGATTTACCAGCAGAGGATGCTAGAGAGGATAGCAACTCAAGGCCATCATCCTCTGATGGAGTGGATACTAATGACAGCACATGA 1974 0.4139 MTLIIAAALSSRIRLVQVVLVIIILLLFLHCESCSCSQEQQVCSGSCGVHNITHPFRLKDDPKACGDSRYGLICEANQLMLYLGRGKYRVQSINYNNFTIRLVDANLPHLHYLPITTSYSLGLYNFSFNNDGPYRLYQQSWYSAYNRLVSSMLYVSCPNGVDFSGGVQVDEDGAACINSSSSLDGKSFYHVNTTDKTLEILGLGDSCRVEFIYLTSWPDNETNISCTKIRDMLLYGFELSWMYSLCKEDEYLGFDNNNKRQCKQDRNLELGQINLIVILGFVATICGAKCVLGAPCFTVLLIYKWRRRHLSMYDGIEDFLRSDNNIMPIRYSYKDIKSITQKFKTKLGNGGFGSVFKGKLRSGRLVAVKVLDKAKTNGQDFINEVATIGTIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSHEESSSLNCEKLYAISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPADNSIVSLTAARGTIGYMAPELFYRNVGTVSYKADVYSFGMLLMEMAGRRKNLNALAEESSFSQIYFPFWVYDQLSDGREITIENDTDEEMKMAKKMMIVALWCIQTKPGDRPSMDKVLEMLEDHEELQIPKMPYLYAQDLPAEDAREDSNSRPSSSDGVDTNDST* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4860 657 SMART serkin_6 341 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4860 657 ProSiteProfiles Protein kinase domain profile. 341 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4860 657 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Lja1g4860 657 PANTHER RUST RESISTANCE KINASE LR10-RELATED 260 635 IPR045874 GO:0004672
Lja1g4860 657 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 17 248 - -
Lja1g4860 657 Pfam Protein kinase domain 343 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4860 657 Gene3D Transferase(Phosphotransferase) domain 1 416 625 - -
Lja1g4860 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Lja1g4860 657 MobiDBLite consensus disorder prediction 630 657 - -
Lja1g4860 657 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 260 635 - -
Lja1g4860 657 SUPERFAMILY Protein kinase-like (PK-like) 324 614 IPR011009 -
Lja1g4860 657 Gene3D Phosphorylase Kinase; domain 1 321 415 - -
Lja1g4860 657 CDD STKc_IRAK 347 614 - -
Lja1g4860 657 Pfam Wall-associated receptor kinase galacturonan-binding 43 104 IPR025287 GO:0030247
Lja1g4860 657 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 248 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4860 Lja-Chr1 66327682 66342233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4860 23 643 Receptor kinase-like Gene Family AT5G38260 36.890 2.35e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g4860 Pkinase 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4860 - - aip:107607706 734.947