Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4851 ATGACAAACTTTCCCAATTCCACTACCACACTCATCCTCACCTTCCTCTTCCTCTTCCTCTTCCTCTTCAACCCTCCTCAACCAAAACACACCGCAGCAGCATCCACAGAACCACCGTGCTCAGACAGCGTTTGCCACATCAAAGAGCCCCTAATCCGCTTCCCATTCCACATCCAACAAACCAACAAAGACACAGAGACATCATGTGGGTACCCAGGATTCAGCGTTTCTTGCAGTGAAACTGGCAAAACACTCCTCAATTTGCCAAACTCAGCTGAACAATTCACCATCCATAGAATCAACTACGCTTCACAGCAACTCTTCGTGAACGACCCAAACAATTGCCTCCCGAAGCGTCTTCTCTCGCTCAACCTCACTGGCTCCCCATACGACGCCGTTTACTATCAGGAATTCACCTTCTTCAACTGCTCCTCCTTCAACTTGGACTACCTCACACGTCGATACAAACCCATAGCTTGTCTCAGCGATGACGGTTCTTCTTCTTCTTCGTCTTCGAGGTACAGTGTTTTTGCAACACCTTCGCGTTCTGCGGTTGTGCAATTGTCATCGGTTTGCGAACTGGTTGGGACGGTGAAGGTGCCTGTTCAGTCGCCGTTTTATGATCAGGTTATGTCGTCGGAGCTGAACGAGGATCTTCGGTTGTCGTGGAATTCGCCGTCGTGTGTGAGGTGTGAGTCTCGCGGTGGCCGGTGTGGGTTCGGAAGCAATGATTCCGCTGTTGAACTTGGCTGTTTCAATGTTCCTCCACGAGGGATGTCCCGTGAAGCAACTTACCTCATAGCAATATGCGTTAGTGTACCGGCACTATTGTGCTTCATTGCACTCTTGAGTTGCATCTGCACCAGGTTCAGATTTGGTACCCACGGCTGGGCTTGGGCTCGTGAGGCGGTGGCCGATTTTGAGCCACTTCTTAACCCACGGCGAACCAATAATACGGGCCTTGATGGGCCGACGATTGCATCCTACCCGAAAATAGTAATAGGTGATGAGGGTACCCGCTTACCCAAGCCCGACGACAAGGCCTGCCCAATATGCCTATCAGAGTACATGCCAAAGGAGACAGTGAAAACCATACCTGAGTGTGAACATTGCTTTCATGCACAATGCATTGATGAATGGCTTCCACTGAATGCATCGTGCCCTATTTGCAGAAATTCTCCAAGAAAGTTACCACAACGTCTTGCTCCATCATGCTAG 1218 0.5 MTNFPNSTTTLILTFLFLFLFLFNPPQPKHTAAASTEPPCSDSVCHIKEPLIRFPFHIQQTNKDTETSCGYPGFSVSCSETGKTLLNLPNSAEQFTIHRINYASQQLFVNDPNNCLPKRLLSLNLTGSPYDAVYYQEFTFFNCSSFNLDYLTRRYKPIACLSDDGSSSSSSSRYSVFATPSRSAVVQLSSVCELVGTVKVPVQSPFYDQVMSSELNEDLRLSWNSPSCVRCESRGGRCGFGSNDSAVELGCFNVPPRGMSREATYLIAICVSVPALLCFIALLSCICTRFRFGTHGWAWAREAVADFEPLLNPRRTNNTGLDGPTIASYPKIVIGDEGTRLPKPDDKACPICLSEYMPKETVKTIPECEHCFHAQCIDEWLPLNASCPICRNSPRKLPQRLAPSC* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4851 405 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 399 - -
Lja1g4851 405 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 399 - -
Lja1g4851 405 Pfam Wall-associated receptor kinase C-terminal 160 252 IPR032872 -
Lja1g4851 405 Pfam Ring finger domain 348 391 IPR001841 -
Lja1g4851 405 ProSiteProfiles Zinc finger RING-type profile. 349 391 IPR001841 -
Lja1g4851 405 Pfam Wall-associated receptor kinase galacturonan-binding 40 111 IPR025287 GO:0030247
Lja1g4851 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 395 IPR013083 -
Lja1g4851 405 SUPERFAMILY RING/U-box 343 394 - -
Lja1g4851 405 SMART ring_2 349 390 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4851 Lja-Chr1 66202777 66206279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4851 34 394 C3H Transcription Factor Family AT2G46495 37.260 8.40e-61 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4851 - - adu:107460528 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4851 1 66202777 66206279 Lja1g4851 1 66202777 66206279 ECH