Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4846 ATGATTATCAAGCGGAACCTGAAATCGCAAATGCCGGCTCTCAAACGGTGTAAAACCGGTGATGTTGCCGGCGAGGATGACGAGTCTGCTCAGGCGAGTAAGAAGAGGAAAACTAACGGGTACTACCATCTGAATCTTCTCGGTGATGTTGCTGCCGGGGTGATTCCGGGGAGTTTTCATGGTCTTTTGAGTGGCGGCGTGGAGAAGGGGTTCTCTGCGTACGGTGGAGTGGAAACGAAGGGTGGTGGTGTTCCGGCGAAGAAGGACCAGGTTCAGCGGCCGCCGTTGGTTAGGACTTCGAGGGGGCGAGTTCAGGTTCTTCCTTCGCGGTTTAAGGACTCTGTTATTGATAATTGGAGGAAGGATGGGAAGAATAGTTTGCCGGATTGTGAGGTTGAAGATGAGGTTGAATGCAAGGTGGAGAAGTTCAGCTTCAGGGCAGCGAAAACTTGCAACCAGAATGCGAGGAAAGGGCGGAACGATGAGAGAATCGGGTATAAGGCTCGCAAGTACTCGGCATTGTGTGGGGATGAGGTTGGTCCGAGGTTTAGGAGTTTTGGTGCAAGGAAGGATTCGAATTTGCGGGGTGCATTGGCCTCGAGGCGGGAGGTGCTGGTTGAGGATGAGAAAGGAAGGTTTTTGGAGGTGGATGGGGTTGATTTGATGGAGGATGATGGAGTTTTGAAGGAGAATGGGGAGAAGAAAGATGGGTTGTATGGACCAGAAGATTTTTATGCAGGAGATATAGTGTGGGCCAAAGCCGGGAGGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTATGAAGCAGGCACCTGAGCTGGTCATGAGGTCTTGTATACCTGATGCAGCATGTGTCATGTTTCTTGGCTACGCAGGCAATGAAAATCAAAGGGACTATGCATGGGTCAAGCATGGCATGATATTTCCATTTACAGATTATGCAGACAGGTTTCAAGGGCAGTCTGAATTGAGTTTCTATAATCCCCCTGACTTCCAAATGGCAGTAGAGGAGGCATTTTTGGCAGAACAGGGCTTCACCGAGAAGTTGATGGCTGATATAAAGGCAGCAGTTGGTAGCATTGGTTGTGATGATGATACTACTCTGAAATCCTTTCAGGAGGGCACTGGTTCAAACCGGTTTGCAAGACACCACTTTCTAAACCAGGATTTATTTGATAAGAAAGGCACACGACCCTGTGAAGCCTGTGGATCGCGCCTTCCGTACAAGATGTCGAAGAAAACAAAGGATTCAACTCCTGGCGGTCAATTTCTATGTAAAACATGTGCCAGGTTAACAAAATCGAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCTGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAGGTGTGGGTGCACGCAGAATGCGACAAAATTTCTAGCCGCCTTCTCAAGAATCTTGAAGACACTGATTATTACTGCCCAACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAGTCACAGCCAAAAGTCAAGTGGAATAAAAACAACGGGCAGTTACTGCTTTCAAATAAGGTTACTGTTCTATGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAATGTGGTTTTTGTGGGACTGAAAAGCAAGCACTTAGTGAATGGGAAAGACACACTGGTTCCAAATTACGAAATTGGAAAACAAGTATTACGGTGAAAGACTCCATGCTACCGCTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTAGCGCTCTAGTGTCTGTCAAACCTAAAAAACCTTCTCTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTTTTACGAGAGAAGTATGAACCGGTGCATGCTAAGTGGACTACAGAGCGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAAACATGTTAAAGACTTCACATCTTGGGTTTGCAAGGCTTGTGAAACACCTGACATCAAACGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGATACATTATGGGTACATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGCATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAGATTCATGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGAGCCGGATATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGTAAGCAGACAACAAAAATGGTTTCTTACTGTGCTTACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACAAAAAACCTTCATCAAAACAAGAAAAAATCTGGAACAAGGTTATTCTCATCTATCAGCGCAAAGCAAGAAGATACCCCTGTTGATAACACTGAGCATGATCCATTCTCTGCTGCTAGGTGTAGAATCTTTCAAAGAACAAATCGCACCAAAAAGAGAGCAGCAGATGAAGCCATTTTTCATCAAGCGAGGGGTCACTACCATCATCCTGTAGATAAAATACAGAGTTTAAATACATACAGAGTGGTGGAGGAACCTCAGGCATTTACTTCTTTCAGAGAACGCCTTCGCCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGTGAACAAGTGAGGCGCAGCATGGCGGACCTGAGAGAAGCACGCTACAGATTACAAAAGAAAGACTGCTATCTATTTAAAATAAGCGAAGAAGTGGTGGTAGATGCCACTGACAAAGGAAATATAGCACGGCTAATTAATCATTCTTGCATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGATGAGAGCCGAATTGTGCTCATTGCAAAGACTAACGTATCTACTGGTGATGAACTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGAAGAATTCAAAGTCCCTTGTCTCTGTAAAGCTCCAAACTGCAGGAAATTCATGAATTAG 3198 0.445 MIIKRNLKSQMPALKRCKTGDVAGEDDESAQASKKRKTNGYYHLNLLGDVAAGVIPGSFHGLLSGGVEKGFSAYGGVETKGGGVPAKKDQVQRPPLVRTSRGRVQVLPSRFKDSVIDNWRKDGKNSLPDCEVEDEVECKVEKFSFRAAKTCNQNARKGRNDERIGYKARKYSALCGDEVGPRFRSFGARKDSNLRGALASRREVLVEDEKGRFLEVDGVDLMEDDGVLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMKQAPELVMRSCIPDAACVMFLGYAGNENQRDYAWVKHGMIFPFTDYADRFQGQSELSFYNPPDFQMAVEEAFLAEQGFTEKLMADIKAAVGSIGCDDDTTLKSFQEGTGSNRFARHHFLNQDLFDKKGTRPCEACGSRLPYKMSKKTKDSTPGGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSRLLKNLEDTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLLLSNKVTVLCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWKTSITVKDSMLPLEQWMLQLAEFHASALVSVKPKKPSLKERKQKLLTFLREKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAKHVKDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGKQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKNLHQNKKKSGTRLFSSISAKQEDTPVDNTEHDPFSAARCRIFQRTNRTKKRAADEAIFHQARGHYHHPVDKIQSLNTYRVVEEPQAFTSFRERLRHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSMADLREARYRLQKKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSTGDELTYDYLFDPDEPEEFKVPCLCKAPNCRKFMN* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4846 1065 CDD SET_SETD1-like 910 1061 - -
Lja1g4846 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 682 IPR013083 -
Lja1g4846 1065 Gene3D - 241 349 - -
Lja1g4846 1065 ProSitePatterns Zinc finger PHD-type signature. 634 679 IPR019786 -
Lja1g4846 1065 Gene3D SET domain 818 1065 IPR046341 -
Lja1g4846 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 802 IPR013083 -
Lja1g4846 1065 ProSiteProfiles Extended PHD (ePHD) domain profile. 685 800 IPR034732 -
Lja1g4846 1065 Pfam SET domain 934 1039 IPR001214 GO:0005515
Lja1g4846 1065 Pfam PHD-zinc-finger like domain 687 799 - -
Lja1g4846 1065 ProSiteProfiles Zinc finger PHD-type profile. 631 682 IPR019787 -
Lja1g4846 1065 Pfam PHD-finger 439 492 IPR019787 -
Lja1g4846 1065 Pfam PHD-finger 646 680 - -
Lja1g4846 1065 CDD PHD_ATX3_4_5_like 633 679 IPR042011 -
Lja1g4846 1065 SUPERFAMILY Tudor/PWWP/MBT 239 350 - -
Lja1g4846 1065 SUPERFAMILY FYVE/PHD zinc finger 631 696 IPR011011 -
Lja1g4846 1065 PANTHER PHD FINGER PROTEINS 1 1065 - -
Lja1g4846 1065 ProSiteProfiles Zinc finger PHD-type profile. 437 493 IPR019787 -
Lja1g4846 1065 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1065 IPR025780 -
Lja1g4846 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 495 IPR013083 -
Lja1g4846 1065 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1065 - -
Lja1g4846 1065 ProSiteProfiles SET domain profile. 923 1040 IPR001214 GO:0005515
Lja1g4846 1065 Pfam PWWP domain 247 341 IPR000313 -
Lja1g4846 1065 ProSiteProfiles Post-SET domain profile. 1049 1065 IPR003616 -
Lja1g4846 1065 ProSiteProfiles PWWP domain profile. 246 315 IPR000313 -
Lja1g4846 1065 CDD PHD_TCF19_like 440 490 - -
Lja1g4846 1065 SUPERFAMILY SET domain 915 1062 IPR046341 -
Lja1g4846 1065 CDD ePHD_ATX3_4_5_like 688 799 IPR041955 -
Lja1g4846 1065 SUPERFAMILY FYVE/PHD zinc finger 437 494 IPR011011 -
Lja1g4846 1065 SMART PHD_3 744 800 IPR001965 -
Lja1g4846 1065 SMART PHD_3 439 491 IPR001965 -
Lja1g4846 1065 SMART PHD_3 633 680 IPR001965 -
Lja1g4846 1065 SMART set_7 923 1046 IPR001214 GO:0005515
Lja1g4846 1065 SMART PostSET_3 1049 1065 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4846 Lja-Chr1 66095533 66106411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4846 634 799 C2H2 Transcription Factor Family AT3G14740 34.857 4.20e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g4846 zf-HC5HC2H_2 2.9e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4846 - - aprc:113853254 1871.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4846 1 66095533 66106411 Lja1g4846 1 66095533 66106411 ECH