Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4845 ATGATCATATGCAATAATTGTCAAGTTCAATCTGGACTTTGTGGCTGTTTGGTGCCAGTTCCACTGTTTCAGTCCTCAACACCTGGATTTTTTTCCCGCACTCAATATCATGCTTCAGTTGATGCTTGGGCTTTGAATTTGAAGCTATCTACCTTACTCCAATTCAATTTATTTGAAAGCTTGAGGCTAGTGAGCCTTTTTTTTGCATGCGAAGGCTCTGCTGAACATAGTGACCTTGTCGAGTTTTCTTCCATGACGGAGTATGATTTGACAGCCGAGGGAGATCTGTTTAAAGCACCTGAACCTATTATTGAAGAGCCAGTCATGGACCTGGATTCCATGACAGCAGCCATGCCGATGATATCTTGCGGGGAAGATGTGTCCTCACAGGCACTGGAATCCACAGATATTGATATTCTTCAAAATGAACAGCTTCTGAACGAGGTATTCTATGAATGCAAAAAGGATCTCTTACAAAATGCAGCATTAGTGTCACCACTTTCTGAGATTCTGGAAGTCAAGATTCCTTTACTGAGCATTGATGAGAACTCAATTCAAGAAAACAAGCCACTTCCTGACATGCCATTACCAAAGAGCGTCAGTTCCGGAAGTTTGAGCTCAATGGACTGGATGCAAGGAGCTGCGATGAAGCCTGCTTTCCTTGATATCCCTGGAATAGATCTCAGCGCAGTTTATGGCATGCGGAGATCGTTTAGTGAAGGTGATATAAAGACTCTTGGTAATGGTAATATGAACATCGTCCAATCTCCCCATGAGAGGCCTTTTTTTAGCAGCAACTGCACAAGTGAGGAACGCCTGCAAAAGCTCTCTAGATACAGGAATAAGAAGACAAAGAGGAATTTTGGGAGGAAAATCAAGTATGCTTGTAGGAAGGCTCTTGCTGACAGTCAACCGAGAATCCGCGGAAGATTTGCAAAGACCGAAGAATCTGAGGTGAAGAGGGAAGGATTTTGA 975 0.4318 MIICNNCQVQSGLCGCLVPVPLFQSSTPGFFSRTQYHASVDAWALNLKLSTLLQFNLFESLRLVSLFFACEGSAEHSDLVEFSSMTEYDLTAEGDLFKAPEPIIEEPVMDLDSMTAAMPMISCGEDVSSQALESTDIDILQNEQLLNEVFYECKKDLLQNAALVSPLSEILEVKIPLLSIDENSIQENKPLPDMPLPKSVSSGSLSSMDWMQGAAMKPAFLDIPGIDLSAVYGMRRSFSEGDIKTLGNGNMNIVQSPHERPFFSSNCTSEERLQKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEESEVKREGF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4845 324 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 64 320 - -
Lja1g4845 324 ProSiteProfiles CCT domain profile. 272 314 IPR010402 GO:0005515
Lja1g4845 324 Pfam CCT motif 272 314 IPR010402 GO:0005515
Lja1g4845 324 PANTHER CCT MOTIF FAMILY PROTEIN 64 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4845 Lja-Chr1 66073176 66078288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4845 268 318 C2C2-CO-like Transcription Factor Family AT5G57660 50.980 3.74e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g4845 CCT 8.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4845 - - gmx:100814332 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4845 1 66073176 66078288 Lja1g4845 1 66073176 66078288 ECH