Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4841 ATGGAGTATGGGAAATTGGGACCCTCCGATTCAGGTGGTGGTTCCTCTCGCTCCGATGTAGCTCTAGTCAACTCAAGAACTAAAACAACCTCCGGAAGAAAGAAGAAGCTCATTATTCTAGTACTCCTCGCCGTCGTCCTGATCGTCGCCTCCGCCGTCGTACTCACCGCTGTACGCTCCCGAGCCGGAGGCTCCGGAGCTTCCACCCTCCGGGCGAAACCGACACAGGCAATTTCAAACACGTGCAGCAAAACACGGTTTCCTTCACTCTGCGTGAAGTCCCTCCTTGATTTTCCGGGATCCACGGCGGCGTCGGAGAGAGACCTCGTCCACATTTCACTCAACATGACCTTCCAGCATCTCGCCAAGGCGCTCTACTCCTCCGCCGCGATCTCCGCCAGCATGGATCCCCGCGTCCGCGCCGCCTACGACGACTGCCTTGAGCTTCTCGATGATTCCGTTGACGCTCTTGGCCGCTCACTCTCCTCCTTCGCCGCCGGGTCGTCCTCCTCCGACGTGATGACATGGCTCAGCGCCGCGCTCACCAACCAGGACACGTGCGCGGATGGGTTTGCCGACACCTCCGGCGACGTCAAGGACCAGATGGCTGGCAACCTCAAGGATCTTTCAGAGCTCGTCAGCAACTGCCTCGCCATATTCGCTGGCGCCGGCGATGACTTCTCCGGCGTTCCCATACAGAATCGACGGTTACTCGCAATGCGAGATGATAATTTCCCGAGATGGTTGAACCGGCGAGATAGGAGATTGCTGAGCCTTCCGGTGTCGGCAATGCAAGCCGATGTTGTCGTCTCGAAAGATGGCAACGGAACGGCGAAGACCATCGCCGAAGCTATTAAGAAGGTGCCGGAGTATGGCTCCCGGCGTTTCATTATCTACGTCAGGGCAGGAAGGTATGAAGAGAACAATTTGAAGATAGGGAGAAAGAGAACCAATGTGATGATCATAGGGGATGGAAAGGGCAAGACAGTCATTACAGGTGGCAAAAATGTCATGGATGGCCTCCTCACCACATTTCACACTGCTTCCTTTGCTGCTTCAGGCGCAGGTTTCATTGCAAGGGACATGACTTTTGAGAACTACGCCGGGCCGGAGAAGCACCAAGCGGTGGCCCTCCGTGTCGGAGCAGACCACGCGGTGGTGTACCGCTGCAATGTGATTGGGTACCAGGACACAATGTATGTACACTCCAACCGTCAATTCTACCGCGAGTGTGACATCTACGGCACCGTAGACTTCATATTCGGCAATGCCGCGGTAGTTTTCCAAAACTGCAGCCTCTACGCGCGAAAGCCCATGGCCCAACAAAAAAACACCATCACGGCCCAAAATAGAAAGGACCCGAATCAGAACACGGGTATTTCAATCCATGCCTGTCGGGTCCTAGCCGCAGCAGATCTCAAAGCTTCCAATGAAAGCTTTGAGACCTATCTGGGCCGACCGTGGAAACTTTACTCTAGAACGGTGTACATGATGTCATACATTGGTGATCACGTGCATCAACGTGGGTGGTTGGAGTGGAACACAACGTTTGCTTTGGATACTTTGTATTATGGTGAGTACATGAATTATGGGCCGGGTGCTGCCGTTGGGCAACGGGTCAACTGGCCCGGGTATCGGGTCATTACATCCGCATTGGAAGCGAGCAGGTTCACGGTGGCGCAATTCATATTGGGCGCTACCTGGTTGCCGTCCACCGGAGTGGCATTCCTAAGTGGCTTATCTACGTGA 1749 0.5477 MEYGKLGPSDSGGGSSRSDVALVNSRTKTTSGRKKKLIILVLLAVVLIVASAVVLTAVRSRAGGSGASTLRAKPTQAISNTCSKTRFPSLCVKSLLDFPGSTAASERDLVHISLNMTFQHLAKALYSSAAISASMDPRVRAAYDDCLELLDDSVDALGRSLSSFAAGSSSSDVMTWLSAALTNQDTCADGFADTSGDVKDQMAGNLKDLSELVSNCLAIFAGAGDDFSGVPIQNRRLLAMRDDNFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGSRRFIIYVRAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMDGLLTTFHTASFAASGAGFIARDMTFENYAGPEKHQAVALRVGADHAVVYRCNVIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHACRVLAAADLKASNESFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGPGAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGLST* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4841 582 PANTHER PECTINESTERASE 27 580 - -
Lja1g4841 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 222 IPR035513 -
Lja1g4841 582 Gene3D - 261 580 IPR012334 -
Lja1g4841 582 SMART PMEI_2 73 219 IPR006501 GO:0004857
Lja1g4841 582 Pfam Pectinesterase 267 565 IPR000070 GO:0030599|GO:0042545
Lja1g4841 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 48 220 IPR006501 GO:0004857
Lja1g4841 582 PANTHER PECTINESTERASE 27 580 - -
Lja1g4841 582 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Lja1g4841 582 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g4841 582 MobiDBLite consensus disorder prediction 11 26 - -
Lja1g4841 582 CDD PMEI-like_3 82 221 - -
Lja1g4841 582 Pfam Plant invertase/pectin methylesterase inhibitor 77 219 IPR006501 GO:0004857
Lja1g4841 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 220 IPR035513 -
Lja1g4841 582 SUPERFAMILY Pectin lyase-like 262 579 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4841 Lja-Chr1 65966149 65969238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4841 34 581 Carbohydrate Esterase AT3G49220 69.534 0.0 809
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4841 1 65966149 65969238 Lja1g4841 1 65966149 65969238 ECH