Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4836 ATGGGGTTGTCTTTGAGAGTTGTAGTCTTGTTTGTATTGGCTTTTATGATGTTTTCTCAAGTAGATTTAGCAGAAGGTGGACATGACAACAGAGTTAGGAGCTACATTAGTTGGGAAGATTTGAAGGTGGATGAGCAAAGCTTAGCCTTGAAGTCCAACAATGATGTTAGAGTTATCATGGTTGATCAGCATGGAAGGGGACATTCAAAAACTGTTCAAGGTGCAGTGGATATGGTTCCAGATCACAACACACAAAGGGTTAAAATCTATATTTTCCCAGGAGTTTACAGAGAAAAAGTGCTTGTGACAAAAACCAAGCCTTATGTGTCATTTATAGGTAAAAGAAATCAAACAGCAAGTGTTGTGATTACTTGGAATAGCAAGTCATCAGATAAAGGTCCAAATGGCATAGCATTAGGCACTTATGGCTCAGCAACTGTAGCAGTAGAATCAGATTATTTTTGTGCAACTGAGATCACTTTTGAGAACACAGTAGTTACAGCACCTGGTACAAAAGGAATGCAAGCAGTGGCACTAAGAGTAGACAGTGATAGAGCCATGTTCTATGGAGTTAAGATTAAGGGAACACAGGACACTCTTTTAGACAGCACAGGAACCCATTACTTCTACAAGTGTCTCATCCAAGGCAAAGTTGATTTCATCTTTGGTAGTGCAAAATCACTATATGAGAACTGTCGTATTGAGTCAATAGCTGAGAACTACGGAGCCATTGCAGCGCATCACAGGGATTCGCCACATGAGGATACAGGCTTTTCTTTTTTAGGGTGTAGCATTGGAGGAAGTGGTGGCAATGTGTACCTTGGGAGAGCATGGGGGGAATACTCAAGAATAATATACTCAAATTGCAACATGGATAATATAATTAATCCTCAAGGATGGTCTGAATGGAATCATCCAGAAAGAAAGAAGACTGCAGTTTTTGGTGAGTATCAGTGTCATGGAAGAGGAGCAGATAGAAGACACAGGGTACCTTGGTCAAAATCATTCAATTATGAAGAAGCTAGGCCCTTTTTGGACAAGAGCTTCATAAATGGAGATCAGTGGCTCAGATTGTAA 1077 0.403 MGLSLRVVVLFVLAFMMFSQVDLAEGGHDNRVRSYISWEDLKVDEQSLALKSNNDVRVIMVDQHGRGHSKTVQGAVDMVPDHNTQRVKIYIFPGVYREKVLVTKTKPYVSFIGKRNQTASVVITWNSKSSDKGPNGIALGTYGSATVAVESDYFCATEITFENTVVTAPGTKGMQAVALRVDSDRAMFYGVKIKGTQDTLLDSTGTHYFYKCLIQGKVDFIFGSAKSLYENCRIESIAENYGAIAAHHRDSPHEDTGFSFLGCSIGGSGGNVYLGRAWGEYSRIIYSNCNMDNIINPQGWSEWNHPERKKTAVFGEYQCHGRGADRRHRVPWSKSFNYEEARPFLDKSFINGDQWLRL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4836 358 SUPERFAMILY Pectin lyase-like 58 356 IPR011050 -
Lja1g4836 358 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 358 - -
Lja1g4836 358 Pfam Pectinesterase 59 353 IPR000070 GO:0030599|GO:0042545
Lja1g4836 358 Gene3D - 57 358 IPR012334 -
Lja1g4836 358 PANTHER PECTINESTERASE QRT1 15 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4836 Lja-Chr1 65879281 65881270 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4836 5 310 Carbohydrate Esterase AT5G55590 54.740 1.32e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4836 K01051 - gmx:100813382 546.584