Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4835 ATGGACTTGGACAGCATCGAGTGCGTGTCATCATCTGATGGCATGGATGAGGATGAGATCCACGCCCACCATCACTCTGAGTTTTCTTCAACGAAGGCTCGCAATGGAGGAGGCAACAATAACAACGCCGCCATGGGTCCCACCGCCATTACTCCGGCGACCAGCGTCCACGAGTTGCTGGAATGCCCTGTATGTACCAATTCAATGTACCCACCAATTCATCAGTGCCACAATGGCCACACATTGTGTTCGACGTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGGGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAATATGCAATTTCAGACCATATAGTTGTCCTTATGCGGGATCCGAGTGTTCTGTTGTCGGGGATATTCCCTTCCTCGTTGCTCACTTGAGGGATGACCATAAGGTGGACATGCACACGGGATGCACGTTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTGCATTTTGAAGCTTTCCAGCTTGGCATGGCCCCCGTTTACATGGCATTCCTTCGTTTCATGGGCGATGAGAATGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAGCTAATCTGGGAGGGTACGCCTCGGAGTGTTCGAGATAGCCACCGTAAAGTCAGGGACAGCCATGATGGCCTCATCATCCAAAGAAATATGGCCCTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAACTCAGAGTTACAGGTAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTGTGCATACCAAATCTCTGTAGCTAA 975 0.4862 MDLDSIECVSSSDGMDEDEIHAHHHSEFSSTKARNGGGNNNNAAMGPTAITPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETICNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4835 324 CDD RING-HC_SIAHs 60 98 - -
Lja1g4835 324 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Lja1g4835 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 315 - -
Lja1g4835 324 MobiDBLite consensus disorder prediction 23 48 - -
Lja1g4835 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 114 IPR013083 -
Lja1g4835 324 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Lja1g4835 324 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 315 - -
Lja1g4835 324 SUPERFAMILY RING/U-box 51 104 - -
Lja1g4835 324 CDD Sina 176 304 - -
Lja1g4835 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 168 IPR013083 -
Lja1g4835 324 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Lja1g4835 324 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lja1g4835 324 SUPERFAMILY TRAF domain-like 115 307 - -
Lja1g4835 324 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4835 Lja-Chr1 65871378 65875338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4835 10 310 C3H Transcription Factor Family AT2G41980 72.757 4.60e-164 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4835 K04506 - fve:101313744 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4835 1 65871378 65875338 Lja1g4835 1 65871378 65875338 ECH