Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4834 ATGGCTTCAAGACCCAACATCGTTCCTCAACAGGGCAAAGAGGAAAGGAATCGGGTGATACTCGGTGATATTGGAAACTTGGAAGCTGCAAGAGAAGTTGAGATCAAGACCAATTTCTGTGACCAACCACTCACCAATGCGCAAGCTGCCACTGAAAGTAACAAGAAACATGCTTGTCCTAATTTGGATGGAATCAAGGTTGCATGTGGTCTAACTAAGAAACCGAATGAGCAAATTGTTGACAATATTGATGCTGGTGATGTTGACAATGAGCTTGCTGTTGTGGAATATATTGAAGATATATACAATTTTTATAGGAGGGTTGAGAATGAGAGGCGTCCCAATGCCTCCTACATGGAGTCACAACCTGAGATAGATCAGACAATGAGAGCTATACTTGTTGATTGGGTGATTGAAGTTCATGTTCACTTGACCAGGTTTCATTTTTCAATTGAAACCCTCTACCTCACCATTAACATAATTGATCGGTTCCTATCACTCATTACTGTTCCAATGAGGGAATTGCAATTGGTTGGTGTCACTGCCATGCTCATGGCATCCAAGTATGAGAACAACTCGAAGGCCCCTGATGTTAACTTCTTCGTCGAGCTCTCAGATGAAACTTGTTCTCATGAACAGATACTTAGCATGGAGAAAATCATACTGAAAAAGCTGGAATGGAACTTGAGTGTGCCTACACCATTTGTTTTCCTAGTTCGCTTTATCAAGGCCTCCTCAATTCGAGATCCGGACGAGGCAGTAGAAAACATGGCACATTTTCTTTGTGAGCTGGGAATGATGCATTATGCCACCTTGCAGTATTGTCCATCAATGATTGCTTCCTCAGCAGTGTTTGCAGCTAGATGCACTCTCAACAAGAGCCCTTCTTGGAATCACACACTTGAGATGCACACTGGTTACTCACAACAACAACTTATGGATTGTGCTACACTCTTGATTGAGAGACGTGGACTCCCTTTGACACCAGAATCATTGGCCACTCTTCCACCCTTTGCTTTCATTTCCTTCAACACTGATGATGCTATTGAAGGAAGTTGTAAGCCTGAAGTAGCTAAAACTGGTTTGGGCTCATCTGCAGCAATGACAACAGCTGTAGTTGCTGCTTTACTTCACTACCTTGGTGTCGTAGAGCTTTCCTCTACGAAAGATCATGAGAACAGGAAGGACATTGTAGATCTTGATATGGTGCATAAAATAGCTCAAACTGCACATTGTATTGCACAGGGGAAAGTAGGTAGTGGGTTTGATGTTAGCTCAGCTGTGTATGGCAGTCATCGTTATGTGCGGTTTTCACCAGAAGTGATTTCTTCTGCTCAGGTTGCAGCTCAAGTAGTGCCCTTGCCCGAAGTTATCACTAACATTCTAAAAGGAAACTGGGTTCATGACAGGACCGAGTTCTCTTTACCACCTTTGATGACTCTTTGGATAGAACAAACTTCTGAACCTGTAAAGGAAGCAATTATTAAAGCACTGCTGGGTGCAAGAGATGCCATGCTGGGAATTAGATATCACATGCGCCTGATGGGCGCGGCTTCAGGGGTTCCAATTGAACCTGAAACACAAACACAACTTCTGGATGCTACAATGAACTTGGAAGGAGTATTATTGGCTGGAGTTCCACGGGCAGGAGGATATGATGCAGCCTTTGCTGTTACTCTGGGAGATTCGAGCAGCAATGTTCTTGCCATGTTAGTTAAAGAAGATCCTTGTGGCGTTTCTTTAGAAAGTGCTGACCCAAGAACCAATGAAATCACATCAGCAGTGTCTTCAATTCATAATGAATAA 1806 0.4319 MASRPNIVPQQGKEERNRVILGDIGNLEAAREVEIKTNFCDQPLTNAQAATESNKKHACPNLDGIKVACGLTKKPNEQIVDNIDAGDVDNELAVVEYIEDIYNFYRRVENERRPNASYMESQPEIDQTMRAILVDWVIEVHVHLTRFHFSIETLYLTINIIDRFLSLITVPMRELQLVGVTAMLMASKYENNSKAPDVNFFVELSDETCSHEQILSMEKIILKKLEWNLSVPTPFVFLVRFIKASSIRDPDEAVENMAHFLCELGMMHYATLQYCPSMIASSAVFAARCTLNKSPSWNHTLEMHTGYSQQQLMDCATLLIERRGLPLTPESLATLPPFAFISFNTDDAIEGSCKPEVAKTGLGSSAAMTTAVVAALLHYLGVVELSSTKDHENRKDIVDLDMVHKIAQTAHCIAQGKVGSGFDVSSAVYGSHRYVRFSPEVISSAQVAAQVVPLPEVITNILKGNWVHDRTEFSLPPLMTLWIEQTSEPVKEAIIKALLGARDAMLGIRYHMRLMGAASGVPIEPETQTQLLDATMNLEGVLLAGVPRAGGYDAAFAVTLGDSSSNVLAMLVKEDPCGVSLESADPRTNEITSAVSSIHNE* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4834 601 Gene3D - 100 321 - -
Lja1g4834 601 Pfam Cyclin, N-terminal domain 100 230 IPR006671 -
Lja1g4834 601 SUPERFAMILY Cyclin-like 89 229 IPR036915 -
Lja1g4834 601 SMART Cyclin_C_2 232 338 IPR004367 -
Lja1g4834 601 SMART cyclin_7 135 223 IPR013763 -
Lja1g4834 601 SMART cyclin_7 236 321 IPR013763 -
Lja1g4834 601 PANTHER - 482 599 - -
Lja1g4834 601 SUPERFAMILY Ribosomal protein S5 domain 2-like 344 442 IPR020568 -
Lja1g4834 601 PANTHER - 320 482 - -
Lja1g4834 601 PANTHER - 482 599 IPR035102 -
Lja1g4834 601 Pfam Cyclin, C-terminal domain 232 320 IPR004367 -
Lja1g4834 601 Gene3D - 114 230 - -
Lja1g4834 601 Gene3D - 329 438 IPR014721 -
Lja1g4834 601 Pfam GHMP kinases N terminal domain 353 431 IPR006204 GO:0005524
Lja1g4834 601 CDD CYCLIN 129 222 IPR013763 -
Lja1g4834 601 CDD CYCLIN 230 319 IPR013763 -
Lja1g4834 601 SUPERFAMILY Cyclin-like 231 321 IPR036915 -
Lja1g4834 601 PANTHER - 320 482 IPR035102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4834 Lja-Chr1 65862702 65869490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4834 1 313 Core Cell Cycle Gene Families AT3G11520 46.419 2.38e-97 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4834 K21777 - gmx:547919 351.288