Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4828 ATGTACTTACCAAGTAAACACTCATTTTCAGTTACTAAAAAGAATTATGACAGTAGGGAAAATGAAGGGAAAGGGCAGCATGAAGAGCCAGAGGTGGTATCTTTTGAGCATTTTCCTACAGATAGTTCACCAGATATCACCAATGATCAGAGGAGTGTCGCATCCGTGCCGGTGACTGAAGATAAAAATCATGCCATTGCCTTTGCAGCCGGCACCTCAGCGGCGGTGGCGGCTGCTCAAAAAGCCGCTAGAGTTGTAAGATTGGCTGGGCGTGGACGCTACTCTAAGGAACAAATGGCAGCAACACTCATTCAATCACAGTACAGAGGATACCTTGCTCGACGTGCACTGCGTGCTTTGAAGGGATTGGTGAGGCTGCAAGCACTTGTCAGAGGACATCATGTAAGGAAACAAGCGCAGATGACAATGCGCTGCATGCAAGCATTGGTCCGAGTTCAGGGAAGAGTAAGAGCTCGCAGACTCCAATTGACTCACCAGAGGCTTCAGGGACATGACAGAAAAGAACAAGAGCCTAAGTTTAAGAGCCCCATGAACATTAAGGGAAATAATTATGAACATTTGAGGAAACATGAAGCTACAATGAAGAAGGAAAGAGCTCTTGCATTAGCTTTCAACTTCCAGCAACAACAGAATCAATATTTGCAAATAGACCCAACTACTGGTGATGATATTGAAAGATGTAGCAATGAGCGTGAAAAAGCCCAATTGGATTGGAACCGGTTGGAACGTTGGATGTCATCGTCACAATCACATGTTAGGCAACGAGAGAACCCATACATGACTCTTGCTACCACAGCAACCAGCACCACAACCACAGACAACATGTCTGAAGAGAAAACACTTGAAATCGACATGGTTCTCCCAAGAGGCTCAATTCACACCAACATGGGCCTGACAGACCAAGACTTTCTTGTTTCAAGCCCAACCTCGAATTGGCACTACCACAGGCAGCAGAGTGGAGGTGTGGTGCCTAGCTATATGGCCCCAACACAGTCTGCAAGGGCCAAGGTTCGTCGGAGTCAAGGCCCGTTTAAGCAACGGGCTTTTGCTGGGCCTCAATGGAACTCGTCGACGAGGACTTATGCTGCTGGGCCGGGTTGTGACTCGTCCAGCTCTGGTGGGACCACCGCGGCTCATCAGTTTTCAAGGAGCCCAAGCCCGAAAATTAATGGGATTCGCCTCCAATCTAGACGGATTTTAGGTGGTAGCCCATACAATGTTGGCACTGAGGACTGGATCAGCCCACTTCGAGCCCAGGGTTGGATGTGA 1290 0.4829 MYLPSKHSFSVTKKNYDSRENEGKGQHEEPEVVSFEHFPTDSSPDITNDQRSVASVPVTEDKNHAIAFAAGTSAAVAAAQKAARVVRLAGRGRYSKEQMAATLIQSQYRGYLARRALRALKGLVRLQALVRGHHVRKQAQMTMRCMQALVRVQGRVRARRLQLTHQRLQGHDRKEQEPKFKSPMNIKGNNYEHLRKHEATMKKERALALAFNFQQQQNQYLQIDPTTGDDIERCSNEREKAQLDWNRLERWMSSSQSHVRQRENPYMTLATTATSTTTTDNMSEEKTLEIDMVLPRGSIHTNMGLTDQDFLVSSPTSNWHYHRQQSGGVVPSYMAPTQSARAKVRRSQGPFKQRAFAGPQWNSSTRTYAAGPGCDSSSSGGTTAAHQFSRSPSPKINGIRLQSRRILGGSPYNVGTEDWISPLRAQGWM* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4828 429 MobiDBLite consensus disorder prediction 167 187 - -
Lja1g4828 429 ProSiteProfiles IQ motif profile. 97 125 IPR000048 GO:0005515
Lja1g4828 429 Pfam Protein of unknown function (DUF4005) 317 356 IPR025064 -
Lja1g4828 429 MobiDBLite consensus disorder prediction 345 397 - -
Lja1g4828 429 PANTHER IQ-DOMAIN 21 22 395 - -
Lja1g4828 429 MobiDBLite consensus disorder prediction 357 397 - -
Lja1g4828 429 ProSiteProfiles IQ motif profile. 121 148 IPR000048 GO:0005515
Lja1g4828 429 MobiDBLite consensus disorder prediction 167 181 - -
Lja1g4828 429 SMART iq_5 96 118 IPR000048 GO:0005515
Lja1g4828 429 SMART iq_5 119 140 IPR000048 GO:0005515
Lja1g4828 429 Pfam IQ calmodulin-binding motif 99 118 IPR000048 GO:0005515
Lja1g4828 429 Pfam IQ calmodulin-binding motif 124 139 IPR000048 GO:0005515
Lja1g4828 429 MobiDBLite consensus disorder prediction 12 35 - -
Lja1g4828 429 MobiDBLite consensus disorder prediction 1 49 - -
Lja1g4828 429 PANTHER IQ-DOMAIN 5-RELATED 22 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4828 Lja-Chr1 65722524 65726782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4828 26 395 IQD Protein Family AT3G49260 43.961 3.36e-75 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4828 - - lja:Lj0g3v0319219.1 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4828 1 65722524 65726782 Lja1g4828 1 65722524 65726782 ECH