Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4820 ATGATGTTTTTCAACAACAACACGAATTTCTATGTGGATTTTGGTACTACTTTTTGGTGTTCTTGTTTTGTAGTGATGGACATTTCGCCATTGGAGGGTTTGTTCGAGCTTGATTGGGATTTGCGTTATCAGAGCAACCACCTTGCCTTCAACGACTTCGACGATCTCGAAAATTTCAGCCGCTACTTCAACCAGCAACTCCCACCTCTCGATGAAGATTTTGAGGTCCACGAGCAAAAATCCCTCAAGGTTGTTCTTCCTGTTCACTGCGGTGGCGGTGGTTCCGGCGGCGAAGCTATTGGGATTGAGTTTGGTGCTGGTGTGACTGTGAAGAAAGAGATGGAGGAGGAGGAGAAGGTGGAGAAGATGCCACCATTGGCGTTAACGTTACCAAGTAGCAGCAGCAGCAGAGTCAGTGTGAAGAAGAGTTGTTCAAGAAAGTTGGAATTTGCTGAAATCAAGAAGCATTTTGGGGTGAAGATTTCTGAGGCGGCGAAGAACATGAATGTTGGCTTGACCTTCCTCAAGAGAAGGTGCAGGGAGCTCAAAATCATGAGGTGGCCTCACAGAAAACTCAAGAGCTTGAACTCTCTCATCGACAATGTCAAGGAATTGGGATTTGAAAATGAGCTTGCCAAGTTGGAGAAGCAGAGAAGAATGTTGGAGAGAGAGCCAGGAATGGAGCTGAATTTGGAAACCATGAAGCTGAGGCAGGCTTGTTTCAAAGCAAATTACAAGAGGAGGAGAAGATGCTTGACCATTCAAGCTTGA 771 0.4578 MMFFNNNTNFYVDFGTTFWCSCFVVMDISPLEGLFELDWDLRYQSNHLAFNDFDDLENFSRYFNQQLPPLDEDFEVHEQKSLKVVLPVHCGGGGSGGEAIGIEFGAGVTVKKEMEEEEKVEKMPPLALTLPSSSSSRVSVKKSCSRKLEFAEIKKHFGVKISEAAKNMNVGLTFLKRRCRELKIMRWPHRKLKSLNSLIDNVKELGFENELAKLEKQRRMLEREPGMELNLETMKLRQACFKANYKRRRRCLTIQA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4820 256 ProSiteProfiles RWP-RK domain profile. 130 216 IPR003035 -
Lja1g4820 256 Coils Coil 204 224 - -
Lja1g4820 256 PANTHER PROTEIN RKD4 134 251 - -
Lja1g4820 256 PANTHER PROTEIN RKD4 134 251 IPR044607 GO:0003700
Lja1g4820 256 Pfam RWP-RK domain 148 195 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4820 Lja-Chr1 65584978 65586148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4820 147 249 AtRKD Transcription Factor Family AT5G53040 64.078 2.10e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja1g4820 RWP-RK 8.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4820 - - aprc:113850801 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4820 1 65584978 65586148 Lja1g4820 1 65584978 65586148 ECH