Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4812 ATGGGCCGTGGTGGAAGAATACCTGTGGAACTTATTGAGAATGAGAAGACTCGCAGGACAACATTCCGGAAGAGAAGAGACAGTCTGATGAAGAAATTGGAGGAGTTTTCCATTCTTTGTGATGTTGATGTTTGTTTAATTATGTATGCTGAAGAATTTGCTGAGCCAAAAACATGGCCTCTAGAAGACACAAAGGTTCAACGTATCATTCAAAAATACTGTAACATAACTAATGATAAGCGTCCTAAGATCTATGATGTGCATGAGTACTATAAGGATAAGGTGAAAAAAATTGAAGCTGAGATTTCCAAAGTGCACAAGGAGAAGCACAAGATCTTGTACCCAACTTGGGATGACTCTTTCAATCATCATGGAGAGGAGCAATTGAGGACGTTTGTTAGCAAGTTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATAAATATCCTAAAAGGAGGTCATGATCTTGGGGGAAAAGAAAAAGCAGAGTATCATATGTTTGGAGAGACTGTCACAGTTTCCCCAACCGGCTATGATACACAGGTTACTCCTCCACCCTACTTAGCCTCAAATCCTATGAACCAACTCAATGGTCTCATGATGCAAAACATGTCTCAAGCCCAAGTTTTCCCTCCTCATCCTATGAATATGATGAAGGCAAACAATGATAAAAACCAGGTAGCATTTTTCCCGTCATTTAATGACTTTGGCCAGAGTTCTCAACCACCACCTTCCTTGCTACATTTTGGTCAAAATGGAAGGGTGGATTGGGCTAATCAAGTTGGTGCTCTTTCTTATGATCTCACAACTGGTATGAACAATGATAAAAACCAGTTAGCATGCTTCCCATCATTTAATGACTTTGGCCAGAGTCCTCAACCATCACCTTCCTTGCTTAACTTTGATCAAAATGGAACGGTGGGTTGGGATAATCAAGTTGGTGCTCTTGCTTATGATTCCACAACTGGTATGCTTATAAATAGAGGTGGAGCTGGAAATAATCAAAACTTGTCACAATGCTATTACAATGGAAATATGCAGAGAATGCAGCAGCCATATAGTATTGGTAATTTGCATACTCAATATCCTTCTCCCGCTTTTATGTCAGATGTACCACCTGGGTTCCAACCTAAAGGATTCTGTCATACAAATGTGGTTCAGGCTCATATGTTCAGCCACATGCATGGATTTGGAAGGAAGTAG 1203 0.4032 MGRGGRIPVELIENEKTRRTTFRKRRDSLMKKLEEFSILCDVDVCLIMYAEEFAEPKTWPLEDTKVQRIIQKYCNITNDKRPKIYDVHEYYKDKVKKIEAEISKVHKEKHKILYPTWDDSFNHHGEEQLRTFVSKLDAKLDACNQRINILKGGHDLGGKEKAEYHMFGETVTVSPTGYDTQVTPPPYLASNPMNQLNGLMMQNMSQAQVFPPHPMNMMKANNDKNQVAFFPSFNDFGQSSQPPPSLLHFGQNGRVDWANQVGALSYDLTTGMNNDKNQLACFPSFNDFGQSPQPSPSLLNFDQNGTVGWDNQVGALAYDSTTGMLINRGGAGNNQNLSQCYYNGNMQRMQQPYSIGNLHTQYPSPAFMSDVPPGFQPKGFCHTNVVQAHMFSHMHGFGRK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4812 400 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Lja1g4812 400 PANTHER PROTEIN, PUTATIVE-RELATED 4 278 - -
Lja1g4812 400 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 51 IPR002100 GO:0003677|GO:0046983
Lja1g4812 400 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Lja1g4812 400 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Lja1g4812 400 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Lja1g4812 400 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Lja1g4812 400 SUPERFAMILY SRF-like 5 89 IPR036879 GO:0003677|GO:0046983
Lja1g4812 400 PANTHER MADS BOX PROTEIN 4 278 - -
Lja1g4812 400 ProSiteProfiles MADS-box domain profile. 5 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4812 Lja-Chr1 65514074 65515276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4812 7 146 Type I MADS-box Gene Family AT5G58890 34.932 1.69e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja1g4812 SRF-TF 3.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4812 - - lang:109350953 275.789