Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4795 ATGGGTAGTTTCAGTGAGGAGGAGGAGGAATGTCGGCTTTTCGATGCTCAGGAGGATGTTGTGTCCACTGTGGATGGAAATTCTGATGATGGTGATGATAATGGGGTGTCTATTGGTTTTGATTATGAAGTTTGGACTCGGAGCCCGAGGAGTGTGAGAGAGCGTAGGGTGAAGTTTATGAAGAGGATGGGTCTTGGAAATTCAGTAGATTTGTGTAGTGTGGAGTGGGAGGAGGAGGGGGTGATGGATAGAGTGGAAGATAGTAGTGGGGCCGTGACCAGTACCTTTGGTCTTGAAGAGGAGTTTTGTTCGACTCAGGCTTCGGTTTCTCGTTGGCCTCATGCGAATTCTTCAGAGGGGTTTGGTTTAGAGGAGAATTTGCCATGTCAAGATGGGAATTTGGTGAGAGGAGTGGGGTTTAATGTGAATAAGGAGGGGAAGGAACATATGAAGATAAGTGGTGGAAGAGATCTGGGTTCAGATCAATTGGTGGCTGTTGCAGAGGAACAGGAGGATTCTGAGGATGCCTCTGGGTCTGCGGTGTCTCCTTCCCAACATAGAGAGTTTGAGAAGATGGATGCTGATGCTGTTTCCCGGAGGACGAACAGTGGTAGAAGGGGTTGGCTCAGGAGATTGCAGTCCATAACATGCATGATTGATAGACAAAGGGAAGGTGATGATAATGGCAGAGAAGGAAGATGTGCAATCTCAGGGTGTAGGCTTCAAAAAGTTAAGGTCCGTCAACATAAGAAGCAAATGAAGGAACTTTCATCTCTTGACATGAGGCAAGATATCCAAGCACATGAAGGTGCAATTTTGACCATGAAGTTTAGTCCTGATGGGCAGTATCTTGCCAGTGGTGGTGAAGACGGGGTTGTGCGCTTGTGGCAAGTGGTCGAGGAGGATAGGTGTAATGAAGTTGACATTCCAGAAATTGACCCATCCTGCATTTACTTTACAGTGAATAATCTCTCTGAATTGACACCACTGTTTATGGATAAGGAAAAAGTTAGCAAACTGAAGAACATGAAGAAAACATCAGACTCAGCTTGCATCGTTTTCCCACCTAAGATCTTCCGGTTGTCAGACAAACCATTGCATGAATTCCGCGGGCATAGAAGTGAAGTTTTGGATCTCTCTTGGTCAAAGAATAATTATCTTCTGTCATCTTCAGTGGACAAAACTGTCCGGTTATGGCAAGTGAATCATGACCATTGCTTGAAAGTTTTTTCACACAGTAATTATGTGACATGCATACAATTCAATCCTGTGGATGATAATTATTTCATTAGCGGTTCTATAGATGGTAAAGTGCGCATCTGGGCAGTTCCTGATTGCCAGGTTGTTGATTGGACTGATATCAGAGATATAGTGACTGCAGTATGTTATCGGCCTGATGGGGAGGGAGGTATTATTGGCTCCTTGGAAGGCAATTGTCGGTTTTATAATATATCAGATAATCGTTTGCAGTTAGATTCCCAACTGTGCTTAATTGGTAAAAAGAAACTTAGTGGCAGAGGGATAACTGGCTTTCAGTTTATCCCTCAAGATTCTAACAAAGTCATGGTTACCTGTGCTGATTCACAAGTCAGAATCCTTGATGGACTTAATGTGATTGGCAAATATAAAAGCCTTAACACAGGGAGCCCTATGTGCGCATCAATTACTTCCGATGGGAAACATATTTTATCAGCATGTGAGGACTCTAATGTATATTTATGGAACGTTAGTCAGGAAGAGTCTAATCCCTTGAAGGCAAAGAAGATTAGGTCTTGTGAGCGATTTTTCTCAAATGCGTCTGTTGCAATCCCTTGGCATGGTTTGAAATCTCAAATTACTGAAAATGAACATCAATTGGATGTCTTGGATAAAAAGTCGCCCCAAGTTGTACAACTCAATCTACCTGCTTCATTCTCCCTGGACCAAGAGTTTTTCTTAGAGTCTTTTCCCAAGGGATCCGCAACTTGGCCTGAGGAGAAGCTTCCCGTTTCAAGCTTGAAGGCTAAAACATCGGTGTTGCATAAATCTGAATACAAGTTCTTGAAATCTTCTTGCAAAAGTACCATGTGCGCCCATGCGTGGGGTATGGTCATCGTGACCGCAGGCTGGGATGGGAGGATAAAATCATACCACAATTACGGGTTACCCGTACCTGTCTGA 2160 0.437 MGSFSEEEEECRLFDAQEDVVSTVDGNSDDGDDNGVSIGFDYEVWTRSPRSVRERRVKFMKRMGLGNSVDLCSVEWEEEGVMDRVEDSSGAVTSTFGLEEEFCSTQASVSRWPHANSSEGFGLEENLPCQDGNLVRGVGFNVNKEGKEHMKISGGRDLGSDQLVAVAEEQEDSEDASGSAVSPSQHREFEKMDADAVSRRTNSGRRGWLRRLQSITCMIDRQREGDDNGREGRCAISGCRLQKVKVRQHKKQMKELSSLDMRQDIQAHEGAILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFMDKEKVSKLKNMKKTSDSACIVFPPKIFRLSDKPLHEFRGHRSEVLDLSWSKNNYLLSSSVDKTVRLWQVNHDHCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAVPDCQVVDWTDIRDIVTAVCYRPDGEGGIIGSLEGNCRFYNISDNRLQLDSQLCLIGKKKLSGRGITGFQFIPQDSNKVMVTCADSQVRILDGLNVIGKYKSLNTGSPMCASITSDGKHILSACEDSNVYLWNVSQEESNPLKAKKIRSCERFFSNASVAIPWHGLKSQITENEHQLDVLDKKSPQVVQLNLPASFSLDQEFFLESFPKGSATWPEEKLPVSSLKAKTSVLHKSEYKFLKSSCKSTMCAHAWGMVIVTAGWDGRIKSYHNYGLPVPV* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4795 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 298 - -
Lja1g4795 719 Gene3D - 502 712 IPR015943 GO:0005515
Lja1g4795 719 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Lja1g4795 719 PRINTS G protein beta WD-40 repeat signature 429 443 IPR020472 -
Lja1g4795 719 PRINTS G protein beta WD-40 repeat signature 387 401 IPR020472 -
Lja1g4795 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 409 IPR001680 GO:0005515
Lja1g4795 719 MobiDBLite consensus disorder prediction 186 200 - -
Lja1g4795 719 Pfam WD domain, G-beta repeat 266 296 IPR001680 GO:0005515
Lja1g4795 719 Pfam WD domain, G-beta repeat 406 441 IPR001680 GO:0005515
Lja1g4795 719 Pfam WD domain, G-beta repeat 364 399 IPR001680 GO:0005515
Lja1g4795 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 441 - -
Lja1g4795 719 Gene3D - 357 501 IPR015943 GO:0005515
Lja1g4795 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 402 - -
Lja1g4795 719 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 4 719 - -
Lja1g4795 719 PANTHER WD REPEAT DOMAIN 44 4 719 IPR040324 -
Lja1g4795 719 Gene3D - 104 309 IPR015943 GO:0005515
Lja1g4795 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 298 IPR001680 GO:0005515
Lja1g4795 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 441 IPR001680 GO:0005515
Lja1g4795 719 SMART WD40_4 444 483 IPR001680 GO:0005515
Lja1g4795 719 SMART WD40_4 494 534 IPR001680 GO:0005515
Lja1g4795 719 SMART WD40_4 362 400 IPR001680 GO:0005515
Lja1g4795 719 SMART WD40_4 258 297 IPR001680 GO:0005515
Lja1g4795 719 SMART WD40_4 403 442 IPR001680 GO:0005515
Lja1g4795 719 SMART WD40_4 674 711 IPR001680 GO:0005515
Lja1g4795 719 SMART WD40_4 535 575 IPR001680 GO:0005515
Lja1g4795 719 MobiDBLite consensus disorder prediction 166 200 - -
Lja1g4795 719 SUPERFAMILY WD40 repeat-like 259 709 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4795 Lja-Chr1 65085704 65089143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4795 265 433 U-box Gene Family AT2G33340 22.335 4.05e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4795 - - gmx:100817209 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0301 4 2428777 2433219 Lja1g4795 1 65085704 65089143 ECH
Lja1g4795 1 65085704 65089143 Lja1g4795 1 65085704 65089143 ECH