Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4784 ATGGAAAATGCCAAGTCTAGGATAGCTATGGCAGAAGCTCTACACATGGAGCAGATAATTGGAGGGGTTCAGAAGTCTAATTCCATAAATTCAGCACAAGAGAAGGAAAGTAGGTATTTGGAAAAGAGAAATTCATTGGGAAGGACACCATTGATGCCTCTTCAGTCGTTTTACTGTCCAATCTCTTACGATATTATGGTGGATCCTGTGGAGACTTCCTCTGGCAGGACATATGAAAGAAGTGCAATAGAGAGGTGGTTTTCTGAAGGGAAATCTCACTGTCCCTTAACCATGTTGCCTGTTGATACTTCAATCCTGAGGCCTAATAAGAATCTGAGAGAGTCTATTCAAGAATGGAAAGACAGGAACACAATCATTACCATTGCTACTATCAAATCCAAACTTGAAACAAATGAAGAAGATGGAGTGCTTCAATCGTTAGATGAATTGCAGGACCTGTGCTTAGAAAGAGAGGTGCATCGTGAATGGTTAAAAATCGAGAATTACACTGCTGTTCTTATTGGCCTTCTTGGTTGTAGAAACTGTGAAATAAGGAAGCGTGTTCTGCTCATCCTGTCTTTGCTTGCAAAGGATAACGCAGAGAACAAGGAGGATATTGCTAAAGTGGATACTGCACTTGGATCAATTGTTCGCTCACTTGCGCGTCAAATTGAGGAAAGGAAGCTGGCCCTGGAGTTGCTGTTGGAGTTATCTAAAAGTGACACGGTGTGCGATCTCATAGGAAACATTCAAGGAAGCATACTTCTCTTGGTAACAATGTTAAATAGTGAGGATGTTGAAGCAGCAAAAAATGCACAGGAGGTGCTAGATAACCTCTCCTTCCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTATACTGCGCAAACTTTCTACAGGACCAGAAAACATCAAGATAGTCATGGCTGAAACTTTGTCAGAAATTCCATTGACTGACCAGAATAAATTGTCCTTAGTCAAAGATGGGGCACTGCAGCCTCTTCTTCAGCTGCTCGTAAATAACGATCTTGAAATCAAGAACGTGGCTGTCAAAGCTCTACTTCAGCTCTCAAGCTTACCAGAGAATGGCCTGCATATGCTTAAGGAAGGTGTTGCTCAACCACTATTGGAATTGCTATACCATCACAGTTTTCAGTCAACTACTCTGCTAGAACAGGTTGTTGCCACAATAATGCATCTTGCCATATCAACCACACACCAAGAAGCTGTTGCGGGACAGGTTTCATTCTTAGCTTCTGATGAAGACACATTCAAATTCTTCTCTCTAATTTCTTTGACGGAACCTGAGATACAGAACAAGATTCTCAAAGCTTTCCAGGCACTGTGCCAATCTTTCTCCGGCTTCTCGATCAGAAACAGGTTGAGACAGATCTCAGCTGCTAAAGTATTGGTCCGCTTGGTAGAGCTTAATACCCAAACTGTGCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACTGAAGACGGTGACTCCAGCAACTTCTCATCACATATAACCAAAACATTCATTGAAATCTTGGTCAACATCATTGAGGCTTCTGATGATGCAGAAGAGATGGTTACTGCTATTGGTATCATGGCTAAACTACCGCAGGAGTCTCACATAACACAGTGGCTTCTAGATTGTGGAGCACTTCAAACCATGTTGACTTGTCTTACTGATCAACACAAGCATCTCTCACACAAAAAGCAAGTTATTGAGAATTCTGTTGAAGCTCTTTGTCGTTTCACTGTCTCCACAAATCTGGAGTGGCAGAAGAGTGTGGCTGAAAAGGGAATAATCCCATTGCTGGTGCAATCTCTGGTTTCTGGGCCTCCTATTTCAAAACGAAATGCAGCAATTTCAATCAAACAGTTTTCAGAAAGTTCATTTGGCCTGAGCAAGCCAATAAAGAAGCCGGGCATCTTCAAACGCTGCCTTGTTGCCCTCGAAACCGGTTGTCCAGCACACCTAGGCACCTGCACTGTTGAGTCATCATTCTGCATTTTGGAAGCTAATGCCTTGGAGCCCCTCGTGCGGATGCTTGCAGAGGAAGATGTTGGAACATGTGAAGCTTCCTTAGATGCATTATTGACTTTGCTTGATGGTGAAGCACCAAACAGTGGAAGTAAAGTACTTTCAGATGCAAATGCTATCACACCAATGATAAAACTATTGGGTATTCCTGCTACAAGGTTGCAGGAAAAAGTTCTGGTGGGTTTAGAAAGAATTTTCCAACAAGATGAAGTGAAAAATAATTACAAATCTTTGGCCACAATGCCCTTGGTAGACATAACTCAGAGTAAAGATAGCCGATTGAGAAGTCTTGCTGCCAAGGGTCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTAG 2400 0.4213 MENAKSRIAMAEALHMEQIIGGVQKSNSINSAQEKESRYLEKRNSLGRTPLMPLQSFYCPISYDIMVDPVETSSGRTYERSAIERWFSEGKSHCPLTMLPVDTSILRPNKNLRESIQEWKDRNTIITIATIKSKLETNEEDGVLQSLDELQDLCLEREVHREWLKIENYTAVLIGLLGCRNCEIRKRVLLILSLLAKDNAENKEDIAKVDTALGSIVRSLARQIEERKLALELLLELSKSDTVCDLIGNIQGSILLLVTMLNSEDVEAAKNAQEVLDNLSFLDQNVIEMAKANYLKPILRKLSTGPENIKIVMAETLSEIPLTDQNKLSLVKDGALQPLLQLLVNNDLEIKNVAVKALLQLSSLPENGLHMLKEGVAQPLLELLYHHSFQSTTLLEQVVATIMHLAISTTHQEAVAGQVSFLASDEDTFKFFSLISLTEPEIQNKILKAFQALCQSFSGFSIRNRLRQISAAKVLVRLVELNTQTVRVNALKLFYCLTEDGDSSNFSSHITKTFIEILVNIIEASDDAEEMVTAIGIMAKLPQESHITQWLLDCGALQTMLTCLTDQHKHLSHKKQVIENSVEALCRFTVSTNLEWQKSVAEKGIIPLLVQSLVSGPPISKRNAAISIKQFSESSFGLSKPIKKPGIFKRCLVALETGCPAHLGTCTVESSFCILEANALEPLVRMLAEEDVGTCEASLDALLTLLDGEAPNSGSKVLSDANAITPMIKLLGIPATRLQEKVLVGLERIFQQDEVKNNYKSLATMPLVDITQSKDSRLRSLAAKGLAQLGVLDKQSSYF* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4784 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
Lja1g4784 799 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 799 - -
Lja1g4784 799 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 1 799 - -
Lja1g4784 799 Pfam U-box domain 57 123 IPR003613 GO:0004842|GO:0016567
Lja1g4784 799 SMART Ubox_2 56 119 IPR003613 GO:0004842|GO:0016567
Lja1g4784 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 126 IPR013083 -
Lja1g4784 799 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842|GO:0016567
Lja1g4784 799 Gene3D - 433 659 IPR011989 -
Lja1g4784 799 SUPERFAMILY RING/U-box 49 125 - -
Lja1g4784 799 Gene3D - 323 427 IPR011989 -
Lja1g4784 799 Gene3D - 660 797 IPR011989 -
Lja1g4784 799 SMART arm_5 667 707 IPR000225 GO:0005515
Lja1g4784 799 SMART arm_5 364 407 IPR000225 GO:0005515
Lja1g4784 799 SMART arm_5 323 363 IPR000225 GO:0005515
Lja1g4784 799 SMART arm_5 544 590 IPR000225 GO:0005515
Lja1g4784 799 SMART arm_5 711 751 IPR000225 GO:0005515
Lja1g4784 799 Gene3D - 127 322 IPR011989 -
Lja1g4784 799 CDD RING-Ubox_PUB 57 98 IPR045210 -
Lja1g4784 799 Pfam Armadillo/beta-catenin-like repeat 324 362 IPR000225 GO:0005515
Lja1g4784 799 SUPERFAMILY ARM repeat 225 738 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4784 Lja-Chr1 64766257 64770002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4784 55 799 U-box Gene Family AT1G76390 28.208 9.77e-61 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4784 - - lja:Lj1g3v1008930.1 1526.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4784 1 64766257 64770002 Lja1g4784 1 64766257 64770002 ECH